rs8238509 SNP Detail

Summary

• ID
  rs8238509
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98306639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCCACGG ATGCTGAGCT
  TTAGACAAAG GCCTGTAAAT GGCCTCTTCC TTGATGACGC TAGCAAACCT GAAGGAGACG
  CGTTTTCAAC ACTCAAGAGG CGTTTGAAGA ACTCCCAGGG GGGTACCGGT GAGAATTCCA
  GGCGTTTGAA GAACTCTCAA GGGAAGTAAG GAGGGGGTAC ACAAAAACTA GGACCAAAAG
  M
  AACCTTTCCC CTTCCACACC TCCTCTTTCT AGGCTAGGAG GGGTTGGGTG AAAAGAGCAA
  ATGGAAGGTC TGAACTGAAA GTGGCCAACA GCAGGGACAA ACCTGGCTCT GCACCATCTT
  CGCCCCCGCC CCTCCCGCCC CCTGCCCCGC CCCGCCCCGA TCCCCGCTCC GCCCTCTCAC
  CCTGGGAGGA GGGATCGCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12732886	X60367_AN2241_8	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8238509					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98306639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	78 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	992 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685256	regulatory region 685256	1615 bp distal
Rr685257	regulatory region 685257	1457 bp distal
Tssr2984	transcription start site region 2984	497 bp upstream
Tssr86646	transcription start site region 86646	193 bp upstream
Tssr86647	transcription start site region 86647	276 bp upstream
Tssr86648	transcription start site region 86648	336 bp upstream
Tssr86649	transcription start site region 86649	373 bp upstream
Tssr86650	transcription start site region 86650	720 bp upstream
Tssr86651	transcription start site region 86651	902 bp upstream