rs8238515 SNP Detail

Summary

• ID
  rs8238515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98305467 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                 C TTATNGAAAG AATCTTAAAA GATTTTCAGT
  AGCACTGCTG GTCCTGGTCC CCTAAAGTTC TGCAAANATA TCTCCAGATA TTTTNAAGTT
  CTGGGGTTAG NAAannnnca cacacacaca cacacacaca cacacacaca cacacacaca
  cacacacaca cacCGTGGTT GAGGGCCACA GNTGGATTCC CATCACAGCC TTGGTCTGTC
  Y
  TTTGTCTGCT CTGGNNTGCT CAGGGCATCN GATTGTTATN TAGATCCTGG CCCTGTGCCC
  CCTCCCCAGT TAATACAAAA CTCA                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	BALB/cByJ	DBA/2J	NZW/Lac	SPRET/EiJ
ss12732892	X60367_AN2243_6	ROCHEBIO	RPAMM	f	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	BALB/cByJ	DBA/2J	NZW/Lac	SPRET/EiJ
rs8238515					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98305467 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	1250 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	12 bp proximal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685255	regulatory region 685255	1052 bp distal
Rr685256	regulatory region 685256	443 bp distal
Rr685257	regulatory region 685257	285 bp distal
Tssr2984	transcription start site region 2984	1669 bp upstream
Tssr86646	transcription start site region 86646	1365 bp upstream
Tssr86647	transcription start site region 86647	1448 bp upstream
Tssr86648	transcription start site region 86648	1508 bp upstream
Tssr86649	transcription start site region 86649	1545 bp upstream
Tssr86650	transcription start site region 86650	1892 bp upstream