rs8238517 SNP Detail

Summary

• ID
  rs8238517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:98305451 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGGTC TGTCCTTTGT CTGCTCTGGC
  R
  TGCTCAGGGC ATCCGATTGT TATCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	BALB/cByJ	C57BL/6J	CAST/EiJ	NZW/Lac	SPRET/EiJ
ss12732894	X60367_AN2243_8	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	BALB/cByJ	C57BL/6J	CAST/EiJ	NZW/Lac	SPRET/EiJ
rs8238517					SNP	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98305451 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	1266 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	28 bp proximal
Rbp1	retinol binding protein 1, cellular	mRNA-UTR
Rr685255	regulatory region 685255	1036 bp distal
Rr685256	regulatory region 685256	427 bp distal
Rr685257	regulatory region 685257	269 bp distal
Tssr2984	transcription start site region 2984	1685 bp upstream
Tssr86646	transcription start site region 86646	1381 bp upstream
Tssr86647	transcription start site region 86647	1464 bp upstream
Tssr86648	transcription start site region 86648	1524 bp upstream
Tssr86649	transcription start site region 86649	1561 bp upstream
Tssr86650	transcription start site region 86650	1908 bp upstream