rs8238519 SNP Detail

Summary

• ID
  rs8238519
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98305427 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                       C TTATNGAAAG
  AATCTTAAAA GATTTTCAGT AGCACTGCTG GTCCTGGTCC CCTAAAGTTC TGCAAANATA
  TCTCCAGATA TTTTNAAGTT CTGGGGTTAG NAAannnnca cacacacaca cacacacaca
  cacacacaca cacacacaca cacacacaca cacCGTGGTT GAGGGCCACA GNTGGATTCC
  CATCACAGCC TTGGTCTGTC NTTTGTCTGC TCTGGNNTGC TCAGGGCATC NGATTGTTAT
  M
  TAGATCCTGG CCCTGTGCCC CCTCCCCAGT TAATACAAAA CTCA                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cJ	DBA/2J	SPRET/EiJ
ss12732896	X60367_AN2243_10	ROCHEBIO	RPAMM	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cJ	DBA/2J	SPRET/EiJ
rs8238519					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98305427 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	1290 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	52 bp proximal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685255	regulatory region 685255	1012 bp distal
Rr685256	regulatory region 685256	403 bp distal
Rr685257	regulatory region 685257	245 bp distal
Tssr2984	transcription start site region 2984	1709 bp upstream
Tssr86646	transcription start site region 86646	1405 bp upstream
Tssr86647	transcription start site region 86647	1488 bp upstream
Tssr86648	transcription start site region 86648	1548 bp upstream
Tssr86649	transcription start site region 86649	1585 bp upstream
Tssr86650	transcription start site region 86650	1932 bp upstream