rs8238530 SNP Detail

Summary

• ID
  rs8238530
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170794562 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CACAGCAAGC TAACGATTTG
  CTCCAACCCT GCTTGGACTG TGGTTCCACA TTTATTACTA ATCATTAGAG ACACCGACAG
  TTTTGGAGGT TCAAGCTGTT CTTCCATCCC CCAAATGGAA GACTCTGTTG TATCTGCTTC
  ATACTTGTCT CCTCTGGCCG ACTGAATTCC TTCATCTTTC CTGCCAAGAA GGGAGGAATC
  S
  CATCCCCATC TCAGGAGAGG AAGGGCAACA CGCGTGTATC TTGGATACCT GTTGCGCGCC
  ATGAACTACT GTCGCTGTGA AATCTGATCA TGTCTATTTT CACAGATGAA GAAAGTGAGG
  CCCAGAAGCC TTAACTTTCT TGCCCCAAAT TGAAGAGCTC CCAAATGAGT GGAGCTAGAA
  ACAGAGATCG ACTGCCTGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12732925	Fcgr2b_1_JC4867_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8238530					SNP	G	G	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170794562 () rs orientation: reverse

Symbol	Name	Function Class
D1Mit147	DNA segment, Chr 1, Massachusetts Institute of Technology 147	1916 bp distal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	839 bp proximal
Rr372438	regulatory region 372438	within coordinates
Tssr14956	transcription start site region 14956	1182 bp upstream
Tssr14957	transcription start site region 14957	470 bp upstream
Tssr14958	transcription start site region 14958	1211 bp downstream