rs8238531 SNP Detail

Summary

• ID
  rs8238531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170795408 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CATCC CAGGGAGCTG CTTCAAGGGC
  Y
  TTTTGTCCAC CCGTTTCCGC TTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12732926	Fcgr2b_1_JC4868_1	ROCHEBIO	RPAMM	f	SNP			T	T	C	C			T	C	C							C	T				T
ss45037683	mCV24426919	ABI	CRAMUS_MOUSE	r	SNP		A		A						G
ss60345263	NES15845053	PERLEGEN	MM_PANEL2	r	SNP	A			A	G		G	G	A			G	A	A		G	G			A	A			A
ss146149181	ENSMUSSNP482729	ENSEMBL	ENSEMBL_Sanger	r	SNP		A		A
ss320115072	CHEV_1_172897970	CHEVERUD	SCREENING_POP	r	SNP															A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8238531					SNP	T	T	T	T	C	C	C	C	T	C	C	C	T	T	T	C	C	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345263	NES15845053	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170795408 () rs orientation: reverse

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	within coordinates
Rr372438	regulatory region 372438	within coordinates
Tssr14957	transcription start site region 14957	1316 bp upstream
Tssr14958	transcription start site region 14958	365 bp downstream