rs8238534 SNP Detail

Summary

• ID
  rs8238534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170797011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCACTCT AACAGGACTA
  GAAGAGTTGA TATCCTAGCT AGCCATGGCT TCTGATCATC TTCCTTCCCG GGCAGAGAGA
  AGGAGAAGTG CAGGGCATCT TCTGAGAACA ATGGTCCATT CCTGGTCCTG ACCTGATACT
  GAGCCCGGTT GCTGATCCAT TCAGAGCAGC TCCAGACAGA CAAAGAGACG GTGACAAAGA
  R
  GAGAGTGAGG AGATATAAAA AGAAGACTTA CCATGAGTCC CAGCAGCAAG ATCTGTAAGA
  AAGGAAGTAA GCATCAACCA GGGCCTTCTG TACTGAGACA TGCCTACCCA GACCCAGAGC
  CCCAACTCAC TCCCACAGCC CACCCTTCAA GGCCTGGCCC TTCCCTGGGA CTTCCTGGAT
  AAAGCACACT TTCAGAGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12732937	Fcgr2b_1_JC4870_6	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8238534					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170797011 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr16	DNA Segment, Chr 1, Derry C. Roopenian 16	421 bp proximal
D1Mit148	DNA segment, Chr 1, Massachusetts Institute of Technology 148	441 bp proximal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	1011 bp distal
Rr25626	regulatory region 25626	1092 bp proximal
Rr372438	regulatory region 372438	446 bp downstream
Tssr14958	transcription start site region 14958	1217 bp upstream