rs8238843 SNP Detail

Summary

• ID
  rs8238843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149979992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG TGATCTGGTA ACATCCCTAC
  Y
  ATTTGTTGTA AGGAAACTAA AGTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
ss12733285	M82866_BS1230_1	ROCHEBIO	RPAMM	f	SNP	C			T	C	C	C	T	C	T	T		T
ss45175909	mCV23137231	ABI	CRAMUS_MOUSE	f	SNP		C	C	T					C		T
ss145704602	ENSMUSSNP727922	ENSEMBL	ENSEMBL_Sanger	f	SNP			C	T							T
ss320045535	CHEV_1_151951371	CHEVERUD	SCREENING_POP	f	SNP												T		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
rs8238843					SNP	C	C	C	T	C	C	C	T	C	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149979992 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	9 bp proximal
Rr24983	regulatory region 24983	41 bp proximal
Tssr242	transcription start site region 242	1436 bp downstream
Tssr9233	transcription start site region 9233	1596 bp downstream
Tssr9234	transcription start site region 9234	1567 bp downstream
Tssr9235	transcription start site region 9235	1536 bp downstream
Tssr9236	transcription start site region 9236	1511 bp downstream
Tssr9237	transcription start site region 9237	1479 bp downstream
Tssr9238	transcription start site region 9238	1448 bp downstream
Tssr9239	transcription start site region 9239	1414 bp downstream
Tssr9240	transcription start site region 9240	1400 bp downstream
Tssr9241	transcription start site region 9241	1370 bp downstream
Tssr9242	transcription start site region 9242	1354 bp downstream
Tssr9243	transcription start site region 9243	1227 bp downstream
Tssr9244	transcription start site region 9244	1176 bp downstream
Tssr9245	transcription start site region 9245	1140 bp downstream
Tssr9246	transcription start site region 9246	1121 bp downstream
Tssr9247	transcription start site region 9247	986 bp downstream
Tssr9248	transcription start site region 9248	553 bp downstream
Tssr9249	transcription start site region 9249	539 bp downstream
Tssr9250	transcription start site region 9250	338 bp downstream
Tssr9251	transcription start site region 9251	286 bp downstream
Tssr9252	transcription start site region 9252	251 bp downstream
Tssr9253	transcription start site region 9253	226 bp downstream
Tssr9254	transcription start site region 9254	210 bp downstream
Tssr9255	transcription start site region 9255	159 bp downstream
Tssr9256	transcription start site region 9256	36 bp upstream
Tssr9257	transcription start site region 9257	60 bp upstream
Tssr9258	transcription start site region 9258	83 bp upstream
Tssr9259	transcription start site region 9259	108 bp upstream
Tssr9260	transcription start site region 9260	163 bp upstream
Tssr9261	transcription start site region 9261	218 bp upstream
Tssr9262	transcription start site region 9262	226 bp upstream
Tssr9263	transcription start site region 9263	248 bp upstream
Tssr9264	transcription start site region 9264	293 bp upstream
Tssr9265	transcription start site region 9265	324 bp upstream
Tssr9266	transcription start site region 9266	413 bp upstream
Tssr9267	transcription start site region 9267	704 bp upstream
Tssr9268	transcription start site region 9268	760 bp upstream
Tssr9269	transcription start site region 9269	1143 bp upstream
Tssr9270	transcription start site region 9270	1183 bp upstream
Tssr9271	transcription start site region 9271	1207 bp upstream
Tssr9272	transcription start site region 9272	1237 bp upstream
Tssr9273	transcription start site region 9273	1289 bp upstream
Tssr9274	transcription start site region 9274	1307 bp upstream
Tssr9275	transcription start site region 9275	1334 bp upstream
Tssr9276	transcription start site region 9276	1349 bp upstream
Tssr9277	transcription start site region 9277	1399 bp upstream
Tssr9278	transcription start site region 9278	1420 bp upstream
Tssr9279	transcription start site region 9279	1441 bp upstream
Tssr9280	transcription start site region 9280	1458 bp upstream
Tssr9281	transcription start site region 9281	1564 bp upstream
Tssr9282	transcription start site region 9282	1599 bp upstream
Tssr9283	transcription start site region 9283	1613 bp upstream
Tssr9284	transcription start site region 9284	1628 bp upstream
Tssr9285	transcription start site region 9285	1638 bp upstream
Tssr9286	transcription start site region 9286	1722 bp upstream