rs8238844 SNP Detail

Summary

• ID
  rs8238844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149979993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGT GATCTGGTAA CATCCCTACC
  R
  TTTGTTGTAA GGAAACTAAA GTCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss12733286	M82866_BS1230_2	ROCHEBIO	RPAMM	f	SNP	A			G	A	A		A		G	A	G	G					G
ss45136967	mCV23137221	ABI	CRAMUS_MOUSE	f	SNP		A	A	G							A		G
ss49513602	NES12839539	PERLEGEN	MM_PANEL2	f	SNP		A			A		A		G	G			G	A	G		G		A	A	G		A
ss145704603	ENSMUSSNP1437787	ENSEMBL	ENSEMBL_Sanger	f	SNP			A	G									G
ss320045536	CHEV_1_151951372	CHEVERUD	SCREENING_POP	f	SNP																G						G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs8238844					SNP	A	A	A	G	A	A	A	A	G	G	A	G	G	A	G	G	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513602	NES12839539	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149979993 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	8 bp proximal
Rr24983	regulatory region 24983	40 bp proximal
Tssr242	transcription start site region 242	1437 bp downstream
Tssr9233	transcription start site region 9233	1597 bp downstream
Tssr9234	transcription start site region 9234	1568 bp downstream
Tssr9235	transcription start site region 9235	1537 bp downstream
Tssr9236	transcription start site region 9236	1512 bp downstream
Tssr9237	transcription start site region 9237	1480 bp downstream
Tssr9238	transcription start site region 9238	1449 bp downstream
Tssr9239	transcription start site region 9239	1415 bp downstream
Tssr9240	transcription start site region 9240	1401 bp downstream
Tssr9241	transcription start site region 9241	1371 bp downstream
Tssr9242	transcription start site region 9242	1355 bp downstream
Tssr9243	transcription start site region 9243	1228 bp downstream
Tssr9244	transcription start site region 9244	1177 bp downstream
Tssr9245	transcription start site region 9245	1141 bp downstream
Tssr9246	transcription start site region 9246	1122 bp downstream
Tssr9247	transcription start site region 9247	987 bp downstream
Tssr9248	transcription start site region 9248	554 bp downstream
Tssr9249	transcription start site region 9249	540 bp downstream
Tssr9250	transcription start site region 9250	339 bp downstream
Tssr9251	transcription start site region 9251	287 bp downstream
Tssr9252	transcription start site region 9252	252 bp downstream
Tssr9253	transcription start site region 9253	227 bp downstream
Tssr9254	transcription start site region 9254	211 bp downstream
Tssr9255	transcription start site region 9255	160 bp downstream
Tssr9256	transcription start site region 9256	35 bp upstream
Tssr9257	transcription start site region 9257	59 bp upstream
Tssr9258	transcription start site region 9258	82 bp upstream
Tssr9259	transcription start site region 9259	107 bp upstream
Tssr9260	transcription start site region 9260	162 bp upstream
Tssr9261	transcription start site region 9261	217 bp upstream
Tssr9262	transcription start site region 9262	225 bp upstream
Tssr9263	transcription start site region 9263	247 bp upstream
Tssr9264	transcription start site region 9264	292 bp upstream
Tssr9265	transcription start site region 9265	323 bp upstream
Tssr9266	transcription start site region 9266	412 bp upstream
Tssr9267	transcription start site region 9267	703 bp upstream
Tssr9268	transcription start site region 9268	759 bp upstream
Tssr9269	transcription start site region 9269	1142 bp upstream
Tssr9270	transcription start site region 9270	1182 bp upstream
Tssr9271	transcription start site region 9271	1206 bp upstream
Tssr9272	transcription start site region 9272	1236 bp upstream
Tssr9273	transcription start site region 9273	1288 bp upstream
Tssr9274	transcription start site region 9274	1306 bp upstream
Tssr9275	transcription start site region 9275	1333 bp upstream
Tssr9276	transcription start site region 9276	1348 bp upstream
Tssr9277	transcription start site region 9277	1398 bp upstream
Tssr9278	transcription start site region 9278	1419 bp upstream
Tssr9279	transcription start site region 9279	1440 bp upstream
Tssr9280	transcription start site region 9280	1457 bp upstream
Tssr9281	transcription start site region 9281	1563 bp upstream
Tssr9282	transcription start site region 9282	1598 bp upstream
Tssr9283	transcription start site region 9283	1612 bp upstream
Tssr9284	transcription start site region 9284	1627 bp upstream
Tssr9285	transcription start site region 9285	1637 bp upstream
Tssr9286	transcription start site region 9286	1721 bp upstream