rs8238845 SNP Detail

Summary

• ID
  rs8238845
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149980247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

      ACACCT GAGCGGTTAC CACTTCAAAC TCAAGTTTGA CCCAGAGCTC CTTTTCAACC
  AGCAGTTCCA GTATCAGAAC CGCATTGCCT CTGAATTCAA CACACTCTAT CACTGGCACC
  CCCTGCTGCC CGACACCTTC AACATTGAAG ACCAGGAGTA CAGCTTCAAA CAGTTTNTNT
  W
  CAACAACTCC ATCCTCCTGG AACATGGACT CACTCAGTTT GTTGAGTCAT TCACCAGACA
  GATTGCTGGC CGGGTAAGCA TTGTTCCTGA AAAGCAANAA CCAGCTGGTC AGTAGCTTTA
  GGATTTTTGT CAN                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	C57BL/6J	CAST/EiJ
ss12733287	M82866_BS1231_1	ROCHEBIO	RPAMM	f	SNP	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	C57BL/6J	CAST/EiJ
rs8238845					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149980247 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	within coordinates
Rr24983	regulatory region 24983	within coordinates
Tssr242	transcription start site region 242	1691 bp downstream
Tssr9233	transcription start site region 9233	1851 bp downstream
Tssr9234	transcription start site region 9234	1822 bp downstream
Tssr9235	transcription start site region 9235	1791 bp downstream
Tssr9236	transcription start site region 9236	1766 bp downstream
Tssr9237	transcription start site region 9237	1734 bp downstream
Tssr9238	transcription start site region 9238	1703 bp downstream
Tssr9239	transcription start site region 9239	1669 bp downstream
Tssr9240	transcription start site region 9240	1655 bp downstream
Tssr9241	transcription start site region 9241	1625 bp downstream
Tssr9242	transcription start site region 9242	1609 bp downstream
Tssr9243	transcription start site region 9243	1482 bp downstream
Tssr9244	transcription start site region 9244	1431 bp downstream
Tssr9245	transcription start site region 9245	1395 bp downstream
Tssr9246	transcription start site region 9246	1376 bp downstream
Tssr9247	transcription start site region 9247	1241 bp downstream
Tssr9248	transcription start site region 9248	808 bp downstream
Tssr9249	transcription start site region 9249	794 bp downstream
Tssr9250	transcription start site region 9250	593 bp downstream
Tssr9251	transcription start site region 9251	541 bp downstream
Tssr9252	transcription start site region 9252	506 bp downstream
Tssr9253	transcription start site region 9253	481 bp downstream
Tssr9254	transcription start site region 9254	465 bp downstream
Tssr9255	transcription start site region 9255	414 bp downstream
Tssr9256	transcription start site region 9256	209 bp downstream
Tssr9257	transcription start site region 9257	175 bp downstream
Tssr9258	transcription start site region 9258	159 bp downstream
Tssr9259	transcription start site region 9259	102 bp downstream
Tssr9260	transcription start site region 9260	50 bp downstream
Tssr9261	transcription start site region 9261	31 bp downstream
Tssr9262	transcription start site region 9262	10 bp downstream
Tssr9263	transcription start site region 9263	within coordinates
Tssr9264	transcription start site region 9264	38 bp upstream
Tssr9265	transcription start site region 9265	69 bp upstream
Tssr9266	transcription start site region 9266	158 bp upstream
Tssr9267	transcription start site region 9267	449 bp upstream
Tssr9268	transcription start site region 9268	505 bp upstream
Tssr9269	transcription start site region 9269	888 bp upstream
Tssr9270	transcription start site region 9270	928 bp upstream
Tssr9271	transcription start site region 9271	952 bp upstream
Tssr9272	transcription start site region 9272	982 bp upstream
Tssr9273	transcription start site region 9273	1034 bp upstream
Tssr9274	transcription start site region 9274	1052 bp upstream
Tssr9275	transcription start site region 9275	1079 bp upstream
Tssr9276	transcription start site region 9276	1094 bp upstream
Tssr9277	transcription start site region 9277	1144 bp upstream
Tssr9278	transcription start site region 9278	1165 bp upstream
Tssr9279	transcription start site region 9279	1186 bp upstream
Tssr9280	transcription start site region 9280	1203 bp upstream
Tssr9281	transcription start site region 9281	1309 bp upstream
Tssr9282	transcription start site region 9282	1344 bp upstream
Tssr9283	transcription start site region 9283	1358 bp upstream
Tssr9284	transcription start site region 9284	1373 bp upstream
Tssr9285	transcription start site region 9285	1383 bp upstream
Tssr9286	transcription start site region 9286	1467 bp upstream
Tssr9287	transcription start site region 9287	1980 bp upstream