rs8238846 SNP Detail

Summary

• ID
  rs8238846
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149980646 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATGAG ATTCTTAGGC AAATTCCTGA
  R
  GTCCTATGTC TTGACCTCAT CACTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss12733288	M82866_BS1232_1	ROCHEBIO	RPAMM	f	SNP	A		A	A		A			G	A					A
ss49513596	NES12839545	PERLEGEN	MM_PANEL2	r	SNP		T	T	T	T		C	T	C	T	T	T		C			T	T	T		T
ss145704611	ENSMUSSNP4741594	ENSEMBL	ENSEMBL_Sanger	r	SNP			T													C
ss320045538	CHEV_1_151952025	CHEVERUD	SCREENING_POP	r	SNP													T							C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs8238846					SNP	A	A	A	A	A	A	G	A	G	A	A	A	A	G	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513596	NES12839545	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149980646 () rs orientation: reverse

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	246 bp distal
Rr24983	regulatory region 24983	350 bp distal
Tssr9243	transcription start site region 9243	1881 bp downstream
Tssr9244	transcription start site region 9244	1830 bp downstream
Tssr9245	transcription start site region 9245	1794 bp downstream
Tssr9246	transcription start site region 9246	1775 bp downstream
Tssr9247	transcription start site region 9247	1640 bp downstream
Tssr9248	transcription start site region 9248	1207 bp downstream
Tssr9249	transcription start site region 9249	1193 bp downstream
Tssr9250	transcription start site region 9250	992 bp downstream
Tssr9251	transcription start site region 9251	940 bp downstream
Tssr9252	transcription start site region 9252	905 bp downstream
Tssr9253	transcription start site region 9253	880 bp downstream
Tssr9254	transcription start site region 9254	864 bp downstream
Tssr9255	transcription start site region 9255	813 bp downstream
Tssr9256	transcription start site region 9256	608 bp downstream
Tssr9257	transcription start site region 9257	574 bp downstream
Tssr9258	transcription start site region 9258	558 bp downstream
Tssr9259	transcription start site region 9259	501 bp downstream
Tssr9260	transcription start site region 9260	449 bp downstream
Tssr9261	transcription start site region 9261	430 bp downstream
Tssr9262	transcription start site region 9262	409 bp downstream
Tssr9263	transcription start site region 9263	397 bp downstream
Tssr9264	transcription start site region 9264	348 bp downstream
Tssr9265	transcription start site region 9265	321 bp downstream
Tssr9266	transcription start site region 9266	232 bp downstream
Tssr9267	transcription start site region 9267	50 bp upstream
Tssr9268	transcription start site region 9268	106 bp upstream
Tssr9269	transcription start site region 9269	489 bp upstream
Tssr9270	transcription start site region 9270	529 bp upstream
Tssr9271	transcription start site region 9271	553 bp upstream
Tssr9272	transcription start site region 9272	583 bp upstream
Tssr9273	transcription start site region 9273	635 bp upstream
Tssr9274	transcription start site region 9274	653 bp upstream
Tssr9275	transcription start site region 9275	680 bp upstream
Tssr9276	transcription start site region 9276	695 bp upstream
Tssr9277	transcription start site region 9277	745 bp upstream
Tssr9278	transcription start site region 9278	766 bp upstream
Tssr9279	transcription start site region 9279	787 bp upstream
Tssr9280	transcription start site region 9280	804 bp upstream
Tssr9281	transcription start site region 9281	910 bp upstream
Tssr9282	transcription start site region 9282	945 bp upstream
Tssr9283	transcription start site region 9283	959 bp upstream
Tssr9284	transcription start site region 9284	974 bp upstream
Tssr9285	transcription start site region 9285	984 bp upstream
Tssr9286	transcription start site region 9286	1068 bp upstream
Tssr9287	transcription start site region 9287	1581 bp upstream
Tssr9288	transcription start site region 9288	1697 bp upstream
Tssr9289	transcription start site region 9289	1714 bp upstream
Tssr9290	transcription start site region 9290	1870 bp upstream
Tssr9291	transcription start site region 9291	1916 bp upstream