rs8238847 SNP Detail

Summary

• ID
  rs8238847
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149980582 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AACAT GATTTTTGTG ATTATAAAAA
  M
  ATAAGCTGAT AAACAAGTCT GAATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss12733289	M82866_BS1232_2	ROCHEBIO	RPAMM	f	SNP	A			C	A		A				A	C					C
ss45107487	mCV23137219	ABI	CRAMUS_MOUSE	r	SNP			T	G						T
ss49513597	NES12839544	PERLEGEN	MM_PANEL2	r	SNP		T		G	T	T		T	G		T	G	T	G		T			T	T	T		T
ss145704607	ENSMUSSNP6953668	ENSEMBL	ENSEMBL_Sanger	r	SNP			T	G														T
ss320045537	CHEV_1_151951961	CHEVERUD	SCREENING_POP	r	SNP															G							T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs8238847					SNP	A	A	A	C	A	A	A	A	C	A	A	C	A	C	C	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513597	NES12839544	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149980582 () rs orientation: reverse

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	182 bp distal
Rr24983	regulatory region 24983	286 bp distal
Tssr9240	transcription start site region 9240	1990 bp downstream
Tssr9241	transcription start site region 9241	1960 bp downstream
Tssr9242	transcription start site region 9242	1944 bp downstream
Tssr9243	transcription start site region 9243	1817 bp downstream
Tssr9244	transcription start site region 9244	1766 bp downstream
Tssr9245	transcription start site region 9245	1730 bp downstream
Tssr9246	transcription start site region 9246	1711 bp downstream
Tssr9247	transcription start site region 9247	1576 bp downstream
Tssr9248	transcription start site region 9248	1143 bp downstream
Tssr9249	transcription start site region 9249	1129 bp downstream
Tssr9250	transcription start site region 9250	928 bp downstream
Tssr9251	transcription start site region 9251	876 bp downstream
Tssr9252	transcription start site region 9252	841 bp downstream
Tssr9253	transcription start site region 9253	816 bp downstream
Tssr9254	transcription start site region 9254	800 bp downstream
Tssr9255	transcription start site region 9255	749 bp downstream
Tssr9256	transcription start site region 9256	544 bp downstream
Tssr9257	transcription start site region 9257	510 bp downstream
Tssr9258	transcription start site region 9258	494 bp downstream
Tssr9259	transcription start site region 9259	437 bp downstream
Tssr9260	transcription start site region 9260	385 bp downstream
Tssr9261	transcription start site region 9261	366 bp downstream
Tssr9262	transcription start site region 9262	345 bp downstream
Tssr9263	transcription start site region 9263	333 bp downstream
Tssr9264	transcription start site region 9264	284 bp downstream
Tssr9265	transcription start site region 9265	257 bp downstream
Tssr9266	transcription start site region 9266	168 bp downstream
Tssr9267	transcription start site region 9267	114 bp upstream
Tssr9268	transcription start site region 9268	170 bp upstream
Tssr9269	transcription start site region 9269	553 bp upstream
Tssr9270	transcription start site region 9270	593 bp upstream
Tssr9271	transcription start site region 9271	617 bp upstream
Tssr9272	transcription start site region 9272	647 bp upstream
Tssr9273	transcription start site region 9273	699 bp upstream
Tssr9274	transcription start site region 9274	717 bp upstream
Tssr9275	transcription start site region 9275	744 bp upstream
Tssr9276	transcription start site region 9276	759 bp upstream
Tssr9277	transcription start site region 9277	809 bp upstream
Tssr9278	transcription start site region 9278	830 bp upstream
Tssr9279	transcription start site region 9279	851 bp upstream
Tssr9280	transcription start site region 9280	868 bp upstream
Tssr9281	transcription start site region 9281	974 bp upstream
Tssr9282	transcription start site region 9282	1009 bp upstream
Tssr9283	transcription start site region 9283	1023 bp upstream
Tssr9284	transcription start site region 9284	1038 bp upstream
Tssr9285	transcription start site region 9285	1048 bp upstream
Tssr9286	transcription start site region 9286	1132 bp upstream
Tssr9287	transcription start site region 9287	1645 bp upstream
Tssr9288	transcription start site region 9288	1761 bp upstream
Tssr9289	transcription start site region 9289	1778 bp upstream
Tssr9290	transcription start site region 9290	1934 bp upstream
Tssr9291	transcription start site region 9291	1980 bp upstream