rs8238848 SNP Detail

Summary

• ID
  rs8238848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981056 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAACG GGTGACAATT GTCCTGGCTG
  Y
  TGAGCATAGG CTTTCCCCCG CTCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12733290	M82866_BS1233_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8238848					SNP	T	T	T	T	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981056 () rs orientation: reverse

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	656 bp distal
Rr24983	regulatory region 24983	760 bp distal
Tssr9248	transcription start site region 9248	1617 bp downstream
Tssr9249	transcription start site region 9249	1603 bp downstream
Tssr9250	transcription start site region 9250	1402 bp downstream
Tssr9251	transcription start site region 9251	1350 bp downstream
Tssr9252	transcription start site region 9252	1315 bp downstream
Tssr9253	transcription start site region 9253	1290 bp downstream
Tssr9254	transcription start site region 9254	1274 bp downstream
Tssr9255	transcription start site region 9255	1223 bp downstream
Tssr9256	transcription start site region 9256	1018 bp downstream
Tssr9257	transcription start site region 9257	984 bp downstream
Tssr9258	transcription start site region 9258	968 bp downstream
Tssr9259	transcription start site region 9259	911 bp downstream
Tssr9260	transcription start site region 9260	859 bp downstream
Tssr9261	transcription start site region 9261	840 bp downstream
Tssr9262	transcription start site region 9262	819 bp downstream
Tssr9263	transcription start site region 9263	807 bp downstream
Tssr9264	transcription start site region 9264	758 bp downstream
Tssr9265	transcription start site region 9265	731 bp downstream
Tssr9266	transcription start site region 9266	642 bp downstream
Tssr9267	transcription start site region 9267	307 bp downstream
Tssr9268	transcription start site region 9268	237 bp downstream
Tssr9269	transcription start site region 9269	79 bp upstream
Tssr9270	transcription start site region 9270	119 bp upstream
Tssr9271	transcription start site region 9271	143 bp upstream
Tssr9272	transcription start site region 9272	173 bp upstream
Tssr9273	transcription start site region 9273	225 bp upstream
Tssr9274	transcription start site region 9274	243 bp upstream
Tssr9275	transcription start site region 9275	270 bp upstream
Tssr9276	transcription start site region 9276	285 bp upstream
Tssr9277	transcription start site region 9277	335 bp upstream
Tssr9278	transcription start site region 9278	356 bp upstream
Tssr9279	transcription start site region 9279	377 bp upstream
Tssr9280	transcription start site region 9280	394 bp upstream
Tssr9281	transcription start site region 9281	500 bp upstream
Tssr9282	transcription start site region 9282	535 bp upstream
Tssr9283	transcription start site region 9283	549 bp upstream
Tssr9284	transcription start site region 9284	564 bp upstream
Tssr9285	transcription start site region 9285	574 bp upstream
Tssr9286	transcription start site region 9286	658 bp upstream
Tssr9287	transcription start site region 9287	1171 bp upstream
Tssr9288	transcription start site region 9288	1287 bp upstream
Tssr9289	transcription start site region 9289	1304 bp upstream
Tssr9290	transcription start site region 9290	1460 bp upstream
Tssr9291	transcription start site region 9291	1506 bp upstream
Tssr9292	transcription start site region 9292	1625 bp upstream
Tssr9293	transcription start site region 9293	1654 bp upstream
Tssr9294	transcription start site region 9294	1674 bp upstream
Tssr9295	transcription start site region 9295	1690 bp upstream
Tssr9296	transcription start site region 9296	1712 bp upstream
Tssr9297	transcription start site region 9297	1721 bp upstream
Tssr9298	transcription start site region 9298	1747 bp upstream
Tssr9299	transcription start site region 9299	1769 bp upstream
Tssr9300	transcription start site region 9300	1786 bp upstream
Tssr9301	transcription start site region 9301	1920 bp upstream
Tssr9302	transcription start site region 9302	1950 bp upstream