rs8238849 SNP Detail

Summary

• ID
  rs8238849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981037 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGGCT GTTGAGCATA GGCTTTCCCC
  Y
  GCTCACTAGC TGACCCCATT CCCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
ss12733291	M82866_BS1233_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	T	C		C
ss320045539	CHEV_1_151952416	CHEVERUD	SCREENING_POP	r	SNP										G		A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
rs8238849					SNP	C	C	C	C	C	C	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981037 () rs orientation: reverse

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	637 bp distal
Rr24983	regulatory region 24983	741 bp distal
Tssr9248	transcription start site region 9248	1598 bp downstream
Tssr9249	transcription start site region 9249	1584 bp downstream
Tssr9250	transcription start site region 9250	1383 bp downstream
Tssr9251	transcription start site region 9251	1331 bp downstream
Tssr9252	transcription start site region 9252	1296 bp downstream
Tssr9253	transcription start site region 9253	1271 bp downstream
Tssr9254	transcription start site region 9254	1255 bp downstream
Tssr9255	transcription start site region 9255	1204 bp downstream
Tssr9256	transcription start site region 9256	999 bp downstream
Tssr9257	transcription start site region 9257	965 bp downstream
Tssr9258	transcription start site region 9258	949 bp downstream
Tssr9259	transcription start site region 9259	892 bp downstream
Tssr9260	transcription start site region 9260	840 bp downstream
Tssr9261	transcription start site region 9261	821 bp downstream
Tssr9262	transcription start site region 9262	800 bp downstream
Tssr9263	transcription start site region 9263	788 bp downstream
Tssr9264	transcription start site region 9264	739 bp downstream
Tssr9265	transcription start site region 9265	712 bp downstream
Tssr9266	transcription start site region 9266	623 bp downstream
Tssr9267	transcription start site region 9267	288 bp downstream
Tssr9268	transcription start site region 9268	218 bp downstream
Tssr9269	transcription start site region 9269	98 bp upstream
Tssr9270	transcription start site region 9270	138 bp upstream
Tssr9271	transcription start site region 9271	162 bp upstream
Tssr9272	transcription start site region 9272	192 bp upstream
Tssr9273	transcription start site region 9273	244 bp upstream
Tssr9274	transcription start site region 9274	262 bp upstream
Tssr9275	transcription start site region 9275	289 bp upstream
Tssr9276	transcription start site region 9276	304 bp upstream
Tssr9277	transcription start site region 9277	354 bp upstream
Tssr9278	transcription start site region 9278	375 bp upstream
Tssr9279	transcription start site region 9279	396 bp upstream
Tssr9280	transcription start site region 9280	413 bp upstream
Tssr9281	transcription start site region 9281	519 bp upstream
Tssr9282	transcription start site region 9282	554 bp upstream
Tssr9283	transcription start site region 9283	568 bp upstream
Tssr9284	transcription start site region 9284	583 bp upstream
Tssr9285	transcription start site region 9285	593 bp upstream
Tssr9286	transcription start site region 9286	677 bp upstream
Tssr9287	transcription start site region 9287	1190 bp upstream
Tssr9288	transcription start site region 9288	1306 bp upstream
Tssr9289	transcription start site region 9289	1323 bp upstream
Tssr9290	transcription start site region 9290	1479 bp upstream
Tssr9291	transcription start site region 9291	1525 bp upstream
Tssr9292	transcription start site region 9292	1644 bp upstream
Tssr9293	transcription start site region 9293	1673 bp upstream
Tssr9294	transcription start site region 9294	1693 bp upstream
Tssr9295	transcription start site region 9295	1709 bp upstream
Tssr9296	transcription start site region 9296	1731 bp upstream
Tssr9297	transcription start site region 9297	1740 bp upstream
Tssr9298	transcription start site region 9298	1766 bp upstream
Tssr9299	transcription start site region 9299	1788 bp upstream
Tssr9300	transcription start site region 9300	1805 bp upstream
Tssr9301	transcription start site region 9301	1939 bp upstream
Tssr9302	transcription start site region 9302	1969 bp upstream