rs8238852 SNP Detail

Summary

• ID
  rs8238852
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981011 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                     GGG AACGGGTGAC
  AATTGTCCTG GCTGNTGAGC ATAGGCTTTC CCCNGCTCAC TAGCTGACCC CANTTCCCAN
  Y
  CCTCTTTCTC ANTAAACTCG GTCCTTTTCT ATTTCTagaa gaagaagaag aaaaggagga
  ggaggannnn nnagaggaag aTAGTTTATC CCTTCACTAA ATGCCCTCTC ACGTTCTCTT
  TTCCCACTTA ATCCCTGATC CTTTTAGAAA ATTTAGAAAC CATTCCTCAC CTGTAAGTTC
  TTCAAATGAT GTGTACGGCT TCAGGGAGAA GCGTTTGCGG TACTCATTGA GAGACTGGTA
  TTTCATCTCT CTGCTCTGGT CAATGGAGGC CTTTGCCACT GCTTGTACAG CAATTGGCAC
  ATTTCTTCCC CCAGC                                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12733294	M82866_BS1233_5	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8238852					SNP	T	T	T	T	T	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981011 () rs orientation: reverse

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	611 bp distal
Rr24983	regulatory region 24983	715 bp distal
Tssr9248	transcription start site region 9248	1572 bp downstream
Tssr9249	transcription start site region 9249	1558 bp downstream
Tssr9250	transcription start site region 9250	1357 bp downstream
Tssr9251	transcription start site region 9251	1305 bp downstream
Tssr9252	transcription start site region 9252	1270 bp downstream
Tssr9253	transcription start site region 9253	1245 bp downstream
Tssr9254	transcription start site region 9254	1229 bp downstream
Tssr9255	transcription start site region 9255	1178 bp downstream
Tssr9256	transcription start site region 9256	973 bp downstream
Tssr9257	transcription start site region 9257	939 bp downstream
Tssr9258	transcription start site region 9258	923 bp downstream
Tssr9259	transcription start site region 9259	866 bp downstream
Tssr9260	transcription start site region 9260	814 bp downstream
Tssr9261	transcription start site region 9261	795 bp downstream
Tssr9262	transcription start site region 9262	774 bp downstream
Tssr9263	transcription start site region 9263	762 bp downstream
Tssr9264	transcription start site region 9264	713 bp downstream
Tssr9265	transcription start site region 9265	686 bp downstream
Tssr9266	transcription start site region 9266	597 bp downstream
Tssr9267	transcription start site region 9267	262 bp downstream
Tssr9268	transcription start site region 9268	192 bp downstream
Tssr9269	transcription start site region 9269	124 bp upstream
Tssr9270	transcription start site region 9270	164 bp upstream
Tssr9271	transcription start site region 9271	188 bp upstream
Tssr9272	transcription start site region 9272	218 bp upstream
Tssr9273	transcription start site region 9273	270 bp upstream
Tssr9274	transcription start site region 9274	288 bp upstream
Tssr9275	transcription start site region 9275	315 bp upstream
Tssr9276	transcription start site region 9276	330 bp upstream
Tssr9277	transcription start site region 9277	380 bp upstream
Tssr9278	transcription start site region 9278	401 bp upstream
Tssr9279	transcription start site region 9279	422 bp upstream
Tssr9280	transcription start site region 9280	439 bp upstream
Tssr9281	transcription start site region 9281	545 bp upstream
Tssr9282	transcription start site region 9282	580 bp upstream
Tssr9283	transcription start site region 9283	594 bp upstream
Tssr9284	transcription start site region 9284	609 bp upstream
Tssr9285	transcription start site region 9285	619 bp upstream
Tssr9286	transcription start site region 9286	703 bp upstream
Tssr9287	transcription start site region 9287	1216 bp upstream
Tssr9288	transcription start site region 9288	1332 bp upstream
Tssr9289	transcription start site region 9289	1349 bp upstream
Tssr9290	transcription start site region 9290	1505 bp upstream
Tssr9291	transcription start site region 9291	1551 bp upstream
Tssr9292	transcription start site region 9292	1670 bp upstream
Tssr9293	transcription start site region 9293	1699 bp upstream
Tssr9294	transcription start site region 9294	1719 bp upstream
Tssr9295	transcription start site region 9295	1735 bp upstream
Tssr9296	transcription start site region 9296	1757 bp upstream
Tssr9297	transcription start site region 9297	1766 bp upstream
Tssr9298	transcription start site region 9298	1792 bp upstream
Tssr9299	transcription start site region 9299	1814 bp upstream
Tssr9300	transcription start site region 9300	1831 bp upstream
Tssr9301	transcription start site region 9301	1965 bp upstream
Tssr9302	transcription start site region 9302	1995 bp upstream