rs8238853 SNP Detail

Summary

• ID
  rs8238853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149980999 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACCCC ATTCCCACTC CTCTTTCTCA
  R
  TAAACTCGGT CCTTTTCTAT TTCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12733295	M82866_BS1233_6	ROCHEBIO	RPAMM	f	SNP	G		G	G	G		G			G	A	G				G
ss49513595	NES12839546	PERLEGEN	MM_PANEL2	r	SNP		C	C	C		C		C	C		T	C	C	C	C		C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8238853					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513595	NES12839546	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149980999 () rs orientation: reverse

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	599 bp distal
Rr24983	regulatory region 24983	703 bp distal
Tssr9247	transcription start site region 9247	1993 bp downstream
Tssr9248	transcription start site region 9248	1560 bp downstream
Tssr9249	transcription start site region 9249	1546 bp downstream
Tssr9250	transcription start site region 9250	1345 bp downstream
Tssr9251	transcription start site region 9251	1293 bp downstream
Tssr9252	transcription start site region 9252	1258 bp downstream
Tssr9253	transcription start site region 9253	1233 bp downstream
Tssr9254	transcription start site region 9254	1217 bp downstream
Tssr9255	transcription start site region 9255	1166 bp downstream
Tssr9256	transcription start site region 9256	961 bp downstream
Tssr9257	transcription start site region 9257	927 bp downstream
Tssr9258	transcription start site region 9258	911 bp downstream
Tssr9259	transcription start site region 9259	854 bp downstream
Tssr9260	transcription start site region 9260	802 bp downstream
Tssr9261	transcription start site region 9261	783 bp downstream
Tssr9262	transcription start site region 9262	762 bp downstream
Tssr9263	transcription start site region 9263	750 bp downstream
Tssr9264	transcription start site region 9264	701 bp downstream
Tssr9265	transcription start site region 9265	674 bp downstream
Tssr9266	transcription start site region 9266	585 bp downstream
Tssr9267	transcription start site region 9267	250 bp downstream
Tssr9268	transcription start site region 9268	180 bp downstream
Tssr9269	transcription start site region 9269	136 bp upstream
Tssr9270	transcription start site region 9270	176 bp upstream
Tssr9271	transcription start site region 9271	200 bp upstream
Tssr9272	transcription start site region 9272	230 bp upstream
Tssr9273	transcription start site region 9273	282 bp upstream
Tssr9274	transcription start site region 9274	300 bp upstream
Tssr9275	transcription start site region 9275	327 bp upstream
Tssr9276	transcription start site region 9276	342 bp upstream
Tssr9277	transcription start site region 9277	392 bp upstream
Tssr9278	transcription start site region 9278	413 bp upstream
Tssr9279	transcription start site region 9279	434 bp upstream
Tssr9280	transcription start site region 9280	451 bp upstream
Tssr9281	transcription start site region 9281	557 bp upstream
Tssr9282	transcription start site region 9282	592 bp upstream
Tssr9283	transcription start site region 9283	606 bp upstream
Tssr9284	transcription start site region 9284	621 bp upstream
Tssr9285	transcription start site region 9285	631 bp upstream
Tssr9286	transcription start site region 9286	715 bp upstream
Tssr9287	transcription start site region 9287	1228 bp upstream
Tssr9288	transcription start site region 9288	1344 bp upstream
Tssr9289	transcription start site region 9289	1361 bp upstream
Tssr9290	transcription start site region 9290	1517 bp upstream
Tssr9291	transcription start site region 9291	1563 bp upstream
Tssr9292	transcription start site region 9292	1682 bp upstream
Tssr9293	transcription start site region 9293	1711 bp upstream
Tssr9294	transcription start site region 9294	1731 bp upstream
Tssr9295	transcription start site region 9295	1747 bp upstream
Tssr9296	transcription start site region 9296	1769 bp upstream
Tssr9297	transcription start site region 9297	1778 bp upstream
Tssr9298	transcription start site region 9298	1804 bp upstream
Tssr9299	transcription start site region 9299	1826 bp upstream
Tssr9300	transcription start site region 9300	1843 bp upstream
Tssr9301	transcription start site region 9301	1977 bp upstream