rs8238859 SNP Detail

Summary

• ID
  rs8238859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CTGTATCTCT ATCTTTGGTA CCTTCCAGGA GAGAAGGAAA TGGCTGCAGA
  R
  TTGAAAGCCC TCTACAGTGA CATCGATGTC ATGGAACTGT ACCCTGCCCT           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss12733301	M82866_BS1234_1	ROCHEBIO	RPAMM	f	SNP	A		A	A	A		A			G
ss49513591	NES12839549	PERLEGEN	MM_PANEL2	f	SNP		A	A	A		A		G	A	G	A	A	A		G	A	A	A		A
ss320045544	CHEV_1_151952525	CHEVERUD	SCREENING_POP	f	SNP														A					G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs8238859					SNP	A	A	A	A	A	A	A	G	A	G	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513591	NES12839549	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981146 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	746 bp distal
Rr24983	regulatory region 24983	850 bp distal
Tssr9248	transcription start site region 9248	1707 bp downstream
Tssr9249	transcription start site region 9249	1693 bp downstream
Tssr9250	transcription start site region 9250	1492 bp downstream
Tssr9251	transcription start site region 9251	1440 bp downstream
Tssr9252	transcription start site region 9252	1405 bp downstream
Tssr9253	transcription start site region 9253	1380 bp downstream
Tssr9254	transcription start site region 9254	1364 bp downstream
Tssr9255	transcription start site region 9255	1313 bp downstream
Tssr9256	transcription start site region 9256	1108 bp downstream
Tssr9257	transcription start site region 9257	1074 bp downstream
Tssr9258	transcription start site region 9258	1058 bp downstream
Tssr9259	transcription start site region 9259	1001 bp downstream
Tssr9260	transcription start site region 9260	949 bp downstream
Tssr9261	transcription start site region 9261	930 bp downstream
Tssr9262	transcription start site region 9262	909 bp downstream
Tssr9263	transcription start site region 9263	897 bp downstream
Tssr9264	transcription start site region 9264	848 bp downstream
Tssr9265	transcription start site region 9265	821 bp downstream
Tssr9266	transcription start site region 9266	732 bp downstream
Tssr9267	transcription start site region 9267	397 bp downstream
Tssr9268	transcription start site region 9268	327 bp downstream
Tssr9269	transcription start site region 9269	within coordinates
Tssr9270	transcription start site region 9270	29 bp upstream
Tssr9271	transcription start site region 9271	53 bp upstream
Tssr9272	transcription start site region 9272	83 bp upstream
Tssr9273	transcription start site region 9273	135 bp upstream
Tssr9274	transcription start site region 9274	153 bp upstream
Tssr9275	transcription start site region 9275	180 bp upstream
Tssr9276	transcription start site region 9276	195 bp upstream
Tssr9277	transcription start site region 9277	245 bp upstream
Tssr9278	transcription start site region 9278	266 bp upstream
Tssr9279	transcription start site region 9279	287 bp upstream
Tssr9280	transcription start site region 9280	304 bp upstream
Tssr9281	transcription start site region 9281	410 bp upstream
Tssr9282	transcription start site region 9282	445 bp upstream
Tssr9283	transcription start site region 9283	459 bp upstream
Tssr9284	transcription start site region 9284	474 bp upstream
Tssr9285	transcription start site region 9285	484 bp upstream
Tssr9286	transcription start site region 9286	568 bp upstream
Tssr9287	transcription start site region 9287	1081 bp upstream
Tssr9288	transcription start site region 9288	1197 bp upstream
Tssr9289	transcription start site region 9289	1214 bp upstream
Tssr9290	transcription start site region 9290	1370 bp upstream
Tssr9291	transcription start site region 9291	1416 bp upstream
Tssr9292	transcription start site region 9292	1535 bp upstream
Tssr9293	transcription start site region 9293	1564 bp upstream
Tssr9294	transcription start site region 9294	1584 bp upstream
Tssr9295	transcription start site region 9295	1600 bp upstream
Tssr9296	transcription start site region 9296	1622 bp upstream
Tssr9297	transcription start site region 9297	1631 bp upstream
Tssr9298	transcription start site region 9298	1657 bp upstream
Tssr9299	transcription start site region 9299	1679 bp upstream
Tssr9300	transcription start site region 9300	1696 bp upstream
Tssr9301	transcription start site region 9301	1830 bp upstream
Tssr9302	transcription start site region 9302	1860 bp upstream
Tssr9303	transcription start site region 9303	1922 bp upstream
Tssr9304	transcription start site region 9304	1946 bp upstream
Tssr9305	transcription start site region 9305	1964 bp upstream
Tssr9306	transcription start site region 9306	1976 bp upstream
Tssr9307	transcription start site region 9307	1980 bp upstream