rs8238860 SNP Detail

Summary

• ID
  rs8238860
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TACCCTGCCC TGCTGGTGGA AAAACCTCGT CCAGATGCTA TCTTTGGGGA
  R
  ACCATGGTAG AGCTTGGAGC ACCATTCTCC TTGAAAGGAC TTATGGGAAA           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss12733302	M82866_BS1234_2	ROCHEBIO	RPAMM	f	SNP	G		G	G	G		G			A
ss49513590	NES12839550	PERLEGEN	MM_PANEL2	f	SNP		G	G	G		G		A	G	A	G	G	G		A	G	G	G		G
ss320045545	CHEV_1_151952615	CHEVERUD	SCREENING_POP	f	SNP														G					A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs8238860					SNP	G	G	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513590	NES12839550	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981236 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	836 bp distal
Rr24983	regulatory region 24983	940 bp distal
Tssr9248	transcription start site region 9248	1797 bp downstream
Tssr9249	transcription start site region 9249	1783 bp downstream
Tssr9250	transcription start site region 9250	1582 bp downstream
Tssr9251	transcription start site region 9251	1530 bp downstream
Tssr9252	transcription start site region 9252	1495 bp downstream
Tssr9253	transcription start site region 9253	1470 bp downstream
Tssr9254	transcription start site region 9254	1454 bp downstream
Tssr9255	transcription start site region 9255	1403 bp downstream
Tssr9256	transcription start site region 9256	1198 bp downstream
Tssr9257	transcription start site region 9257	1164 bp downstream
Tssr9258	transcription start site region 9258	1148 bp downstream
Tssr9259	transcription start site region 9259	1091 bp downstream
Tssr9260	transcription start site region 9260	1039 bp downstream
Tssr9261	transcription start site region 9261	1020 bp downstream
Tssr9262	transcription start site region 9262	999 bp downstream
Tssr9263	transcription start site region 9263	987 bp downstream
Tssr9264	transcription start site region 9264	938 bp downstream
Tssr9265	transcription start site region 9265	911 bp downstream
Tssr9266	transcription start site region 9266	822 bp downstream
Tssr9267	transcription start site region 9267	487 bp downstream
Tssr9268	transcription start site region 9268	417 bp downstream
Tssr9269	transcription start site region 9269	80 bp downstream
Tssr9270	transcription start site region 9270	49 bp downstream
Tssr9271	transcription start site region 9271	26 bp downstream
Tssr9272	transcription start site region 9272	within coordinates
Tssr9273	transcription start site region 9273	45 bp upstream
Tssr9274	transcription start site region 9274	63 bp upstream
Tssr9275	transcription start site region 9275	90 bp upstream
Tssr9276	transcription start site region 9276	105 bp upstream
Tssr9277	transcription start site region 9277	155 bp upstream
Tssr9278	transcription start site region 9278	176 bp upstream
Tssr9279	transcription start site region 9279	197 bp upstream
Tssr9280	transcription start site region 9280	214 bp upstream
Tssr9281	transcription start site region 9281	320 bp upstream
Tssr9282	transcription start site region 9282	355 bp upstream
Tssr9283	transcription start site region 9283	369 bp upstream
Tssr9284	transcription start site region 9284	384 bp upstream
Tssr9285	transcription start site region 9285	394 bp upstream
Tssr9286	transcription start site region 9286	478 bp upstream
Tssr9287	transcription start site region 9287	991 bp upstream
Tssr9288	transcription start site region 9288	1107 bp upstream
Tssr9289	transcription start site region 9289	1124 bp upstream
Tssr9290	transcription start site region 9290	1280 bp upstream
Tssr9291	transcription start site region 9291	1326 bp upstream
Tssr9292	transcription start site region 9292	1445 bp upstream
Tssr9293	transcription start site region 9293	1474 bp upstream
Tssr9294	transcription start site region 9294	1494 bp upstream
Tssr9295	transcription start site region 9295	1510 bp upstream
Tssr9296	transcription start site region 9296	1532 bp upstream
Tssr9297	transcription start site region 9297	1541 bp upstream
Tssr9298	transcription start site region 9298	1567 bp upstream
Tssr9299	transcription start site region 9299	1589 bp upstream
Tssr9300	transcription start site region 9300	1606 bp upstream
Tssr9301	transcription start site region 9301	1740 bp upstream
Tssr9302	transcription start site region 9302	1770 bp upstream
Tssr9303	transcription start site region 9303	1832 bp upstream
Tssr9304	transcription start site region 9304	1856 bp upstream
Tssr9305	transcription start site region 9305	1874 bp upstream
Tssr9306	transcription start site region 9306	1886 bp upstream
Tssr9307	transcription start site region 9307	1890 bp upstream
Tssr9308	transcription start site region 9308	1923 bp upstream
Tssr9309	transcription start site region 9309	1937 bp upstream
Tssr9310	transcription start site region 9310	1968 bp upstream
Tssr9311	transcription start site region 9311	1980 bp upstream