rs8238861 SNP Detail

Summary

• ID
  rs8238861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                   GGTGTCCCTT NACTTCTTTC AATGTGCAAG
  ATCCACAGCC TACCAAAACA GCCACCATCA ATGCAAGTGC CTCCCACTCC AGACTAGATG
  ACATTAACCC TACAGTACTA ATCAAAAGGC GTTCAACTGA GCTGTAAAAG TCTACTGACC
  R
  TATTTATTTA TTTATGTGAA Gaatttaatt taattattta atatttataC TGAATTTTTT
  TTCATGTAAC ATCTTCCATA ACAGAAGGCA ATGTTCTTGA ACAATGTTAC ATTTGTGAAG
  ATTCCCTCCG GTGTTTGTCC TTTAAATATG TGTTACCTGA AACTGAAAGG AAATCAGCAT
  TCATTCCTCT ACATAAGCCA GTGAGAAGGG AAATGAATTT TGATATCTTT ATACTTGAAT
  TTCAGATCAT GAAT                                                  
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12733303	M82866_BS1235_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8238861					SNP	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981547 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	1147 bp distal
Rr24983	regulatory region 24983	1251 bp distal
Tssr9250	transcription start site region 9250	1893 bp downstream
Tssr9251	transcription start site region 9251	1841 bp downstream
Tssr9252	transcription start site region 9252	1806 bp downstream
Tssr9253	transcription start site region 9253	1781 bp downstream
Tssr9254	transcription start site region 9254	1765 bp downstream
Tssr9255	transcription start site region 9255	1714 bp downstream
Tssr9256	transcription start site region 9256	1509 bp downstream
Tssr9257	transcription start site region 9257	1475 bp downstream
Tssr9258	transcription start site region 9258	1459 bp downstream
Tssr9259	transcription start site region 9259	1402 bp downstream
Tssr9260	transcription start site region 9260	1350 bp downstream
Tssr9261	transcription start site region 9261	1331 bp downstream
Tssr9262	transcription start site region 9262	1310 bp downstream
Tssr9263	transcription start site region 9263	1298 bp downstream
Tssr9264	transcription start site region 9264	1249 bp downstream
Tssr9265	transcription start site region 9265	1222 bp downstream
Tssr9266	transcription start site region 9266	1133 bp downstream
Tssr9267	transcription start site region 9267	798 bp downstream
Tssr9268	transcription start site region 9268	728 bp downstream
Tssr9269	transcription start site region 9269	391 bp downstream
Tssr9270	transcription start site region 9270	360 bp downstream
Tssr9271	transcription start site region 9271	337 bp downstream
Tssr9272	transcription start site region 9272	306 bp downstream
Tssr9273	transcription start site region 9273	262 bp downstream
Tssr9274	transcription start site region 9274	242 bp downstream
Tssr9275	transcription start site region 9275	210 bp downstream
Tssr9276	transcription start site region 9276	196 bp downstream
Tssr9277	transcription start site region 9277	140 bp downstream
Tssr9278	transcription start site region 9278	119 bp downstream
Tssr9279	transcription start site region 9279	101 bp downstream
Tssr9280	transcription start site region 9280	1 bp downstream
Tssr9281	transcription start site region 9281	9 bp upstream
Tssr9282	transcription start site region 9282	44 bp upstream
Tssr9283	transcription start site region 9283	58 bp upstream
Tssr9284	transcription start site region 9284	73 bp upstream
Tssr9285	transcription start site region 9285	83 bp upstream
Tssr9286	transcription start site region 9286	167 bp upstream
Tssr9287	transcription start site region 9287	680 bp upstream
Tssr9288	transcription start site region 9288	796 bp upstream
Tssr9289	transcription start site region 9289	813 bp upstream
Tssr9290	transcription start site region 9290	969 bp upstream
Tssr9291	transcription start site region 9291	1015 bp upstream
Tssr9292	transcription start site region 9292	1134 bp upstream
Tssr9293	transcription start site region 9293	1163 bp upstream
Tssr9294	transcription start site region 9294	1183 bp upstream
Tssr9295	transcription start site region 9295	1199 bp upstream
Tssr9296	transcription start site region 9296	1221 bp upstream
Tssr9297	transcription start site region 9297	1230 bp upstream
Tssr9298	transcription start site region 9298	1256 bp upstream
Tssr9299	transcription start site region 9299	1278 bp upstream
Tssr9300	transcription start site region 9300	1295 bp upstream
Tssr9301	transcription start site region 9301	1429 bp upstream
Tssr9302	transcription start site region 9302	1459 bp upstream
Tssr9303	transcription start site region 9303	1521 bp upstream
Tssr9304	transcription start site region 9304	1545 bp upstream
Tssr9305	transcription start site region 9305	1563 bp upstream
Tssr9306	transcription start site region 9306	1575 bp upstream
Tssr9307	transcription start site region 9307	1579 bp upstream
Tssr9308	transcription start site region 9308	1612 bp upstream
Tssr9309	transcription start site region 9309	1626 bp upstream
Tssr9310	transcription start site region 9310	1657 bp upstream
Tssr9311	transcription start site region 9311	1669 bp upstream
Tssr9312	transcription start site region 9312	1694 bp upstream
Tssr9313	transcription start site region 9313	1714 bp upstream
Tssr9314	transcription start site region 9314	1725 bp upstream
Tssr9315	transcription start site region 9315	1819 bp upstream