rs8238862 SNP Detail

Summary

• ID
  rs8238862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCA GGTATCAACA CTGTTGGTTA
  Y
  AACTGTGTCT TCTTTACTAT GATAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss12733304	M82866_BS1236_1	ROCHEBIO	RPAMM	f	SNP			C		C		C	T	C					C
ss49513587	NES12839553	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		T	C	T	C	C	C		T		C	C	T		C
ss320045549	CHEV_1_151953268	CHEVERUD	SCREENING_POP	f	SNP												C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs8238862					SNP	C	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513587	NES12839553	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981889 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	1489 bp distal
Rr24983	regulatory region 24983	1593 bp distal
Tssr9256	transcription start site region 9256	1851 bp downstream
Tssr9257	transcription start site region 9257	1817 bp downstream
Tssr9258	transcription start site region 9258	1801 bp downstream
Tssr9259	transcription start site region 9259	1744 bp downstream
Tssr9260	transcription start site region 9260	1692 bp downstream
Tssr9261	transcription start site region 9261	1673 bp downstream
Tssr9262	transcription start site region 9262	1652 bp downstream
Tssr9263	transcription start site region 9263	1640 bp downstream
Tssr9264	transcription start site region 9264	1591 bp downstream
Tssr9265	transcription start site region 9265	1564 bp downstream
Tssr9266	transcription start site region 9266	1475 bp downstream
Tssr9267	transcription start site region 9267	1140 bp downstream
Tssr9268	transcription start site region 9268	1070 bp downstream
Tssr9269	transcription start site region 9269	733 bp downstream
Tssr9270	transcription start site region 9270	702 bp downstream
Tssr9271	transcription start site region 9271	679 bp downstream
Tssr9272	transcription start site region 9272	648 bp downstream
Tssr9273	transcription start site region 9273	604 bp downstream
Tssr9274	transcription start site region 9274	584 bp downstream
Tssr9275	transcription start site region 9275	552 bp downstream
Tssr9276	transcription start site region 9276	538 bp downstream
Tssr9277	transcription start site region 9277	482 bp downstream
Tssr9278	transcription start site region 9278	461 bp downstream
Tssr9279	transcription start site region 9279	443 bp downstream
Tssr9280	transcription start site region 9280	343 bp downstream
Tssr9281	transcription start site region 9281	323 bp downstream
Tssr9282	transcription start site region 9282	289 bp downstream
Tssr9283	transcription start site region 9283	274 bp downstream
Tssr9284	transcription start site region 9284	262 bp downstream
Tssr9285	transcription start site region 9285	248 bp downstream
Tssr9286	transcription start site region 9286	169 bp downstream
Tssr9287	transcription start site region 9287	338 bp upstream
Tssr9288	transcription start site region 9288	454 bp upstream
Tssr9289	transcription start site region 9289	471 bp upstream
Tssr9290	transcription start site region 9290	627 bp upstream
Tssr9291	transcription start site region 9291	673 bp upstream
Tssr9292	transcription start site region 9292	792 bp upstream
Tssr9293	transcription start site region 9293	821 bp upstream
Tssr9294	transcription start site region 9294	841 bp upstream
Tssr9295	transcription start site region 9295	857 bp upstream
Tssr9296	transcription start site region 9296	879 bp upstream
Tssr9297	transcription start site region 9297	888 bp upstream
Tssr9298	transcription start site region 9298	914 bp upstream
Tssr9299	transcription start site region 9299	936 bp upstream
Tssr9300	transcription start site region 9300	953 bp upstream
Tssr9301	transcription start site region 9301	1087 bp upstream
Tssr9302	transcription start site region 9302	1117 bp upstream
Tssr9303	transcription start site region 9303	1179 bp upstream
Tssr9304	transcription start site region 9304	1203 bp upstream
Tssr9305	transcription start site region 9305	1221 bp upstream
Tssr9306	transcription start site region 9306	1233 bp upstream
Tssr9307	transcription start site region 9307	1237 bp upstream
Tssr9308	transcription start site region 9308	1270 bp upstream
Tssr9309	transcription start site region 9309	1284 bp upstream
Tssr9310	transcription start site region 9310	1315 bp upstream
Tssr9311	transcription start site region 9311	1327 bp upstream
Tssr9312	transcription start site region 9312	1352 bp upstream
Tssr9313	transcription start site region 9313	1372 bp upstream
Tssr9314	transcription start site region 9314	1383 bp upstream
Tssr9315	transcription start site region 9315	1477 bp upstream
Tssr9316	transcription start site region 9316	1660 bp upstream
Tssr9317	transcription start site region 9317	1937 bp upstream