rs8238863 SNP Detail

Summary

• ID
  rs8238863
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149982343 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCTAC CACTCATCAA CGAGCTTTAA
  M
  GCTCACACTC ATAGTTAAGA CAGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12733305	M82866_BS1237_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8238863					SNP	A	A	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149982343 () rs orientation: reverse

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9266	transcription start site region 9266	1929 bp downstream
Tssr9267	transcription start site region 9267	1594 bp downstream
Tssr9268	transcription start site region 9268	1524 bp downstream
Tssr9269	transcription start site region 9269	1187 bp downstream
Tssr9270	transcription start site region 9270	1156 bp downstream
Tssr9271	transcription start site region 9271	1133 bp downstream
Tssr9272	transcription start site region 9272	1102 bp downstream
Tssr9273	transcription start site region 9273	1058 bp downstream
Tssr9274	transcription start site region 9274	1038 bp downstream
Tssr9275	transcription start site region 9275	1006 bp downstream
Tssr9276	transcription start site region 9276	992 bp downstream
Tssr9277	transcription start site region 9277	936 bp downstream
Tssr9278	transcription start site region 9278	915 bp downstream
Tssr9279	transcription start site region 9279	897 bp downstream
Tssr9280	transcription start site region 9280	797 bp downstream
Tssr9281	transcription start site region 9281	777 bp downstream
Tssr9282	transcription start site region 9282	743 bp downstream
Tssr9283	transcription start site region 9283	728 bp downstream
Tssr9284	transcription start site region 9284	716 bp downstream
Tssr9285	transcription start site region 9285	702 bp downstream
Tssr9286	transcription start site region 9286	623 bp downstream
Tssr9287	transcription start site region 9287	107 bp downstream
Tssr9288	transcription start site region 9288	within coordinates
Tssr9289	transcription start site region 9289	17 bp upstream
Tssr9290	transcription start site region 9290	173 bp upstream
Tssr9291	transcription start site region 9291	219 bp upstream
Tssr9292	transcription start site region 9292	338 bp upstream
Tssr9293	transcription start site region 9293	367 bp upstream
Tssr9294	transcription start site region 9294	387 bp upstream
Tssr9295	transcription start site region 9295	403 bp upstream
Tssr9296	transcription start site region 9296	425 bp upstream
Tssr9297	transcription start site region 9297	434 bp upstream
Tssr9298	transcription start site region 9298	460 bp upstream
Tssr9299	transcription start site region 9299	482 bp upstream
Tssr9300	transcription start site region 9300	499 bp upstream
Tssr9301	transcription start site region 9301	633 bp upstream
Tssr9302	transcription start site region 9302	663 bp upstream
Tssr9303	transcription start site region 9303	725 bp upstream
Tssr9304	transcription start site region 9304	749 bp upstream
Tssr9305	transcription start site region 9305	767 bp upstream
Tssr9306	transcription start site region 9306	779 bp upstream
Tssr9307	transcription start site region 9307	783 bp upstream
Tssr9308	transcription start site region 9308	816 bp upstream
Tssr9309	transcription start site region 9309	830 bp upstream
Tssr9310	transcription start site region 9310	861 bp upstream
Tssr9311	transcription start site region 9311	873 bp upstream
Tssr9312	transcription start site region 9312	898 bp upstream
Tssr9313	transcription start site region 9313	918 bp upstream
Tssr9314	transcription start site region 9314	929 bp upstream
Tssr9315	transcription start site region 9315	1023 bp upstream
Tssr9316	transcription start site region 9316	1206 bp upstream
Tssr9317	transcription start site region 9317	1483 bp upstream