rs8238864 SNP Detail

Summary

• ID
  rs8238864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149982691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGCCTG GTACTCAGTA
  GGTTTTTGCT GTGAGGTTAA AGACTTGCCA GGCTGAACTT CGAAACAGTT TTTCTGTTGC
  ACAGTATGAT GTAACAGTCC ATCTCTCAAT GCAATAGGTA TCAGTGGCCT CGTGAGCTTC
  TTCACAATAT TGATATGTCT TCCAGCCCAT TGAACCTGGA CTGCAGAAGG CCCCATGTCA
  Y
  GTGTGAGCTC AGCCTGGATG CCAGCATTGC TGCTCCTCTT AGTTCCGTTT CTCGTGGTCA
  CTTTACTACG AGAAACGCTG ATTGGGTTTT CGTAGCTGTG TTCCAGGTTT TTAGTATCAG
  AACTATTCTT TCTTTAACCT CTATTCATAT TTTCTCTACT TGAAGTTTTA CATTCAGGAA
  AACCTCAGCT CAGGACTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12733306	M82866_BS1238_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8238864					SNP	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149982691 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9267	transcription start site region 9267	1942 bp downstream
Tssr9268	transcription start site region 9268	1872 bp downstream
Tssr9269	transcription start site region 9269	1535 bp downstream
Tssr9270	transcription start site region 9270	1504 bp downstream
Tssr9271	transcription start site region 9271	1481 bp downstream
Tssr9272	transcription start site region 9272	1450 bp downstream
Tssr9273	transcription start site region 9273	1406 bp downstream
Tssr9274	transcription start site region 9274	1386 bp downstream
Tssr9275	transcription start site region 9275	1354 bp downstream
Tssr9276	transcription start site region 9276	1340 bp downstream
Tssr9277	transcription start site region 9277	1284 bp downstream
Tssr9278	transcription start site region 9278	1263 bp downstream
Tssr9279	transcription start site region 9279	1245 bp downstream
Tssr9280	transcription start site region 9280	1145 bp downstream
Tssr9281	transcription start site region 9281	1125 bp downstream
Tssr9282	transcription start site region 9282	1091 bp downstream
Tssr9283	transcription start site region 9283	1076 bp downstream
Tssr9284	transcription start site region 9284	1064 bp downstream
Tssr9285	transcription start site region 9285	1050 bp downstream
Tssr9286	transcription start site region 9286	971 bp downstream
Tssr9287	transcription start site region 9287	455 bp downstream
Tssr9288	transcription start site region 9288	341 bp downstream
Tssr9289	transcription start site region 9289	324 bp downstream
Tssr9290	transcription start site region 9290	170 bp downstream
Tssr9291	transcription start site region 9291	122 bp downstream
Tssr9292	transcription start site region 9292	within coordinates
Tssr9293	transcription start site region 9293	19 bp upstream
Tssr9294	transcription start site region 9294	39 bp upstream
Tssr9295	transcription start site region 9295	55 bp upstream
Tssr9296	transcription start site region 9296	77 bp upstream
Tssr9297	transcription start site region 9297	86 bp upstream
Tssr9298	transcription start site region 9298	112 bp upstream
Tssr9299	transcription start site region 9299	134 bp upstream
Tssr9300	transcription start site region 9300	151 bp upstream
Tssr9301	transcription start site region 9301	285 bp upstream
Tssr9302	transcription start site region 9302	315 bp upstream
Tssr9303	transcription start site region 9303	377 bp upstream
Tssr9304	transcription start site region 9304	401 bp upstream
Tssr9305	transcription start site region 9305	419 bp upstream
Tssr9306	transcription start site region 9306	431 bp upstream
Tssr9307	transcription start site region 9307	435 bp upstream
Tssr9308	transcription start site region 9308	468 bp upstream
Tssr9309	transcription start site region 9309	482 bp upstream
Tssr9310	transcription start site region 9310	513 bp upstream
Tssr9311	transcription start site region 9311	525 bp upstream
Tssr9312	transcription start site region 9312	550 bp upstream
Tssr9313	transcription start site region 9313	570 bp upstream
Tssr9314	transcription start site region 9314	581 bp upstream
Tssr9315	transcription start site region 9315	675 bp upstream
Tssr9316	transcription start site region 9316	858 bp upstream
Tssr9317	transcription start site region 9317	1135 bp upstream
Tssr9318	transcription start site region 9318	1864 bp upstream