rs8238865 SNP Detail

Summary

• ID
  rs8238865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149982737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCATCTCT CAATGCAATA GGTATCAGTG
  GCCTCGTGAG CTTCTTCACA ATATTGATAT GTCTTCCAGC CCATTGAACC TGGACTGCAG
  AAGGCCCCAT GTCATGTGTG AGCTCAGCCT GGATGCCAGC ATTGCTGCTC CTCTTAGTTC
  Y
  GTTTCTCGTG GTCACTTTAC TACGAGAAAC GCTGATTGGG TTTTCGTAGC TGTGTTCCAG
  GTTTTTAGTA TCAGAACTAT TCTTTCTTTA ACCTCTATTC ATATTTTCTC TACTTGAAGT
  TTTACATTCA GGAAAACCTC AGCTCAGGAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J	SPRET/EiJ
ss12733307	M82866_BS1238_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C		C		T
ss320045551	CHEV_1_151954116	CHEVERUD	SCREENING_POP	f	SNP										C		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J	SPRET/EiJ
rs8238865					SNP	C	C	C	C	C	C	C	C	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149982737 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9267	transcription start site region 9267	1988 bp downstream
Tssr9268	transcription start site region 9268	1918 bp downstream
Tssr9269	transcription start site region 9269	1581 bp downstream
Tssr9270	transcription start site region 9270	1550 bp downstream
Tssr9271	transcription start site region 9271	1527 bp downstream
Tssr9272	transcription start site region 9272	1496 bp downstream
Tssr9273	transcription start site region 9273	1452 bp downstream
Tssr9274	transcription start site region 9274	1432 bp downstream
Tssr9275	transcription start site region 9275	1400 bp downstream
Tssr9276	transcription start site region 9276	1386 bp downstream
Tssr9277	transcription start site region 9277	1330 bp downstream
Tssr9278	transcription start site region 9278	1309 bp downstream
Tssr9279	transcription start site region 9279	1291 bp downstream
Tssr9280	transcription start site region 9280	1191 bp downstream
Tssr9281	transcription start site region 9281	1171 bp downstream
Tssr9282	transcription start site region 9282	1137 bp downstream
Tssr9283	transcription start site region 9283	1122 bp downstream
Tssr9284	transcription start site region 9284	1110 bp downstream
Tssr9285	transcription start site region 9285	1096 bp downstream
Tssr9286	transcription start site region 9286	1017 bp downstream
Tssr9287	transcription start site region 9287	501 bp downstream
Tssr9288	transcription start site region 9288	387 bp downstream
Tssr9289	transcription start site region 9289	370 bp downstream
Tssr9290	transcription start site region 9290	216 bp downstream
Tssr9291	transcription start site region 9291	168 bp downstream
Tssr9292	transcription start site region 9292	40 bp downstream
Tssr9293	transcription start site region 9293	24 bp downstream
Tssr9294	transcription start site region 9294	1 bp downstream
Tssr9295	transcription start site region 9295	9 bp upstream
Tssr9296	transcription start site region 9296	31 bp upstream
Tssr9297	transcription start site region 9297	40 bp upstream
Tssr9298	transcription start site region 9298	66 bp upstream
Tssr9299	transcription start site region 9299	88 bp upstream
Tssr9300	transcription start site region 9300	105 bp upstream
Tssr9301	transcription start site region 9301	239 bp upstream
Tssr9302	transcription start site region 9302	269 bp upstream
Tssr9303	transcription start site region 9303	331 bp upstream
Tssr9304	transcription start site region 9304	355 bp upstream
Tssr9305	transcription start site region 9305	373 bp upstream
Tssr9306	transcription start site region 9306	385 bp upstream
Tssr9307	transcription start site region 9307	389 bp upstream
Tssr9308	transcription start site region 9308	422 bp upstream
Tssr9309	transcription start site region 9309	436 bp upstream
Tssr9310	transcription start site region 9310	467 bp upstream
Tssr9311	transcription start site region 9311	479 bp upstream
Tssr9312	transcription start site region 9312	504 bp upstream
Tssr9313	transcription start site region 9313	524 bp upstream
Tssr9314	transcription start site region 9314	535 bp upstream
Tssr9315	transcription start site region 9315	629 bp upstream
Tssr9316	transcription start site region 9316	812 bp upstream
Tssr9317	transcription start site region 9317	1089 bp upstream
Tssr9318	transcription start site region 9318	1818 bp upstream