rs8238866 SNP Detail

Summary

• ID
  rs8238866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149982745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTTCGAA ACAGTTTTTC
  TGTTGCACAG TATGATGTAA CAGTCCATCT CTCAATGCAA TAGGTATCAG TGGCCTCGTG
  AGCTTCTTCA CAATATTGAT ATGTCTTCCA GCCCATTGAA CCTGGACTGC AGAAGGCCCC
  ATGTCATGTG TGAGCTCAGC CTGGATGCCA GCATTGCTGC TCCTCTTAGT TCCGTTTCTC
  R
  TGGTCACTTT ACTACGAGAA ACGCTGATTG GGTTTTCGTA GCTGTGTTCC AGGTTTTTAG
  TATCAGAACT ATTCTTTCTT TAACCTCTAT TCATATTTTC TCTACTTGAA GTTTTACATT
  CAGGAAAACC TCAGCTCAGG ACTACTATGT ACCTCCCCTT TGGAGGGAAA AATTATTTTA
  GGTAAAAGGC AAAAATTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	SPRET/EiJ
ss12733308	M82866_BS1238_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	SPRET/EiJ
rs8238866					SNP	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149982745 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9267	transcription start site region 9267	1996 bp downstream
Tssr9268	transcription start site region 9268	1926 bp downstream
Tssr9269	transcription start site region 9269	1589 bp downstream
Tssr9270	transcription start site region 9270	1558 bp downstream
Tssr9271	transcription start site region 9271	1535 bp downstream
Tssr9272	transcription start site region 9272	1504 bp downstream
Tssr9273	transcription start site region 9273	1460 bp downstream
Tssr9274	transcription start site region 9274	1440 bp downstream
Tssr9275	transcription start site region 9275	1408 bp downstream
Tssr9276	transcription start site region 9276	1394 bp downstream
Tssr9277	transcription start site region 9277	1338 bp downstream
Tssr9278	transcription start site region 9278	1317 bp downstream
Tssr9279	transcription start site region 9279	1299 bp downstream
Tssr9280	transcription start site region 9280	1199 bp downstream
Tssr9281	transcription start site region 9281	1179 bp downstream
Tssr9282	transcription start site region 9282	1145 bp downstream
Tssr9283	transcription start site region 9283	1130 bp downstream
Tssr9284	transcription start site region 9284	1118 bp downstream
Tssr9285	transcription start site region 9285	1104 bp downstream
Tssr9286	transcription start site region 9286	1025 bp downstream
Tssr9287	transcription start site region 9287	509 bp downstream
Tssr9288	transcription start site region 9288	395 bp downstream
Tssr9289	transcription start site region 9289	378 bp downstream
Tssr9290	transcription start site region 9290	224 bp downstream
Tssr9291	transcription start site region 9291	176 bp downstream
Tssr9292	transcription start site region 9292	48 bp downstream
Tssr9293	transcription start site region 9293	32 bp downstream
Tssr9294	transcription start site region 9294	9 bp downstream
Tssr9295	transcription start site region 9295	1 bp upstream
Tssr9296	transcription start site region 9296	23 bp upstream
Tssr9297	transcription start site region 9297	32 bp upstream
Tssr9298	transcription start site region 9298	58 bp upstream
Tssr9299	transcription start site region 9299	80 bp upstream
Tssr9300	transcription start site region 9300	97 bp upstream
Tssr9301	transcription start site region 9301	231 bp upstream
Tssr9302	transcription start site region 9302	261 bp upstream
Tssr9303	transcription start site region 9303	323 bp upstream
Tssr9304	transcription start site region 9304	347 bp upstream
Tssr9305	transcription start site region 9305	365 bp upstream
Tssr9306	transcription start site region 9306	377 bp upstream
Tssr9307	transcription start site region 9307	381 bp upstream
Tssr9308	transcription start site region 9308	414 bp upstream
Tssr9309	transcription start site region 9309	428 bp upstream
Tssr9310	transcription start site region 9310	459 bp upstream
Tssr9311	transcription start site region 9311	471 bp upstream
Tssr9312	transcription start site region 9312	496 bp upstream
Tssr9313	transcription start site region 9313	516 bp upstream
Tssr9314	transcription start site region 9314	527 bp upstream
Tssr9315	transcription start site region 9315	621 bp upstream
Tssr9316	transcription start site region 9316	804 bp upstream
Tssr9317	transcription start site region 9317	1081 bp upstream
Tssr9318	transcription start site region 9318	1810 bp upstream