rs8238868 SNP Detail

Summary

• ID
  rs8238868
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149982783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

     GGTATCA GTGGCCTCGT GAGCTTCTTC ACAATATTGA TATGTCTTCC AGCCCATTGA
  ACCTGGACTG CAGAAGGCCC CATGTCANGT GTGAGCTCAG CCTGGATGCC AGCATTGCTG
  CTCCTCTTAG TTCNGTTTCT CNTGGTCACT TTACTACGAG AAACNGCTGA TTGGGTTTTC
  R
  TAGCTGTGTT CCAGGTTTTT AGTATCAGAA CTATTCTTTC TTTAACCTCT ATTCANTATT
  TTCTCTACTT GAAGTTTTAC ATTCAGGAAA ANCTCAGCTC AGGACTACTA TGTACCTCCC
  CTTTGGAGGG AAAAATTATT TTAGGTAAAA GGCaaaaatt ttttaaaaat atttttattt
  ataattatat GGAAGGGCCC TACCAAGATG CTAGAA                          
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	SPRET/EiJ
ss12733310	M82866_BS1238_5	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	SPRET/EiJ
rs8238868					SNP	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149982783 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9268	transcription start site region 9268	1964 bp downstream
Tssr9269	transcription start site region 9269	1627 bp downstream
Tssr9270	transcription start site region 9270	1596 bp downstream
Tssr9271	transcription start site region 9271	1573 bp downstream
Tssr9272	transcription start site region 9272	1542 bp downstream
Tssr9273	transcription start site region 9273	1498 bp downstream
Tssr9274	transcription start site region 9274	1478 bp downstream
Tssr9275	transcription start site region 9275	1446 bp downstream
Tssr9276	transcription start site region 9276	1432 bp downstream
Tssr9277	transcription start site region 9277	1376 bp downstream
Tssr9278	transcription start site region 9278	1355 bp downstream
Tssr9279	transcription start site region 9279	1337 bp downstream
Tssr9280	transcription start site region 9280	1237 bp downstream
Tssr9281	transcription start site region 9281	1217 bp downstream
Tssr9282	transcription start site region 9282	1183 bp downstream
Tssr9283	transcription start site region 9283	1168 bp downstream
Tssr9284	transcription start site region 9284	1156 bp downstream
Tssr9285	transcription start site region 9285	1142 bp downstream
Tssr9286	transcription start site region 9286	1063 bp downstream
Tssr9287	transcription start site region 9287	547 bp downstream
Tssr9288	transcription start site region 9288	433 bp downstream
Tssr9289	transcription start site region 9289	416 bp downstream
Tssr9290	transcription start site region 9290	262 bp downstream
Tssr9291	transcription start site region 9291	214 bp downstream
Tssr9292	transcription start site region 9292	86 bp downstream
Tssr9293	transcription start site region 9293	70 bp downstream
Tssr9294	transcription start site region 9294	47 bp downstream
Tssr9295	transcription start site region 9295	20 bp downstream
Tssr9296	transcription start site region 9296	8 bp downstream
Tssr9297	transcription start site region 9297	within coordinates
Tssr9298	transcription start site region 9298	20 bp upstream
Tssr9299	transcription start site region 9299	42 bp upstream
Tssr9300	transcription start site region 9300	59 bp upstream
Tssr9301	transcription start site region 9301	193 bp upstream
Tssr9302	transcription start site region 9302	223 bp upstream
Tssr9303	transcription start site region 9303	285 bp upstream
Tssr9304	transcription start site region 9304	309 bp upstream
Tssr9305	transcription start site region 9305	327 bp upstream
Tssr9306	transcription start site region 9306	339 bp upstream
Tssr9307	transcription start site region 9307	343 bp upstream
Tssr9308	transcription start site region 9308	376 bp upstream
Tssr9309	transcription start site region 9309	390 bp upstream
Tssr9310	transcription start site region 9310	421 bp upstream
Tssr9311	transcription start site region 9311	433 bp upstream
Tssr9312	transcription start site region 9312	458 bp upstream
Tssr9313	transcription start site region 9313	478 bp upstream
Tssr9314	transcription start site region 9314	489 bp upstream
Tssr9315	transcription start site region 9315	583 bp upstream
Tssr9316	transcription start site region 9316	766 bp upstream
Tssr9317	transcription start site region 9317	1043 bp upstream
Tssr9318	transcription start site region 9318	1772 bp upstream