rs8238870 SNP Detail

Summary

• ID
  rs8238870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149982874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGGCCC CATGTCATGT
  GTGAGCTCAG CCTGGATGCC AGCATTGCTG CTCCTCTTAG TTCCGTTTCT CGTGGTCACT
  TTACTACGAG AAACGCTGAT TGGGTTTTCG TAGCTGTGTT CCAGGTTTTT AGTATCAGAA
  CTATTCTTTC TTTAACCTCT ATTCATATTT TCTCTACTTG AAGTTTTACA TTCAGGAAAA
  Y
  CTCAGCTCAG GACTACTATG TACCTCCCCT TTGGAGGGAA AAATTATTTT AGGTAAAAGG
  CAAAAATTTT TTAAAAATAT TTTTATTTAT AATTATATGG AAGGGCCCTA CCAAGATGCT
  AGAAATATAG GGAGTTCCTG ACAAGAAATT TCCATTCTTA TTCTGAAGAA TTGCTTTCTT
  ACTTAAAAAC AAAGACAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12733312	M82866_BS1238_7	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8238870					SNP	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149982874 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9269	transcription start site region 9269	1718 bp downstream
Tssr9270	transcription start site region 9270	1687 bp downstream
Tssr9271	transcription start site region 9271	1664 bp downstream
Tssr9272	transcription start site region 9272	1633 bp downstream
Tssr9273	transcription start site region 9273	1589 bp downstream
Tssr9274	transcription start site region 9274	1569 bp downstream
Tssr9275	transcription start site region 9275	1537 bp downstream
Tssr9276	transcription start site region 9276	1523 bp downstream
Tssr9277	transcription start site region 9277	1467 bp downstream
Tssr9278	transcription start site region 9278	1446 bp downstream
Tssr9279	transcription start site region 9279	1428 bp downstream
Tssr9280	transcription start site region 9280	1328 bp downstream
Tssr9281	transcription start site region 9281	1308 bp downstream
Tssr9282	transcription start site region 9282	1274 bp downstream
Tssr9283	transcription start site region 9283	1259 bp downstream
Tssr9284	transcription start site region 9284	1247 bp downstream
Tssr9285	transcription start site region 9285	1233 bp downstream
Tssr9286	transcription start site region 9286	1154 bp downstream
Tssr9287	transcription start site region 9287	638 bp downstream
Tssr9288	transcription start site region 9288	524 bp downstream
Tssr9289	transcription start site region 9289	507 bp downstream
Tssr9290	transcription start site region 9290	353 bp downstream
Tssr9291	transcription start site region 9291	305 bp downstream
Tssr9292	transcription start site region 9292	177 bp downstream
Tssr9293	transcription start site region 9293	161 bp downstream
Tssr9294	transcription start site region 9294	138 bp downstream
Tssr9295	transcription start site region 9295	111 bp downstream
Tssr9296	transcription start site region 9296	99 bp downstream
Tssr9297	transcription start site region 9297	86 bp downstream
Tssr9298	transcription start site region 9298	60 bp downstream
Tssr9299	transcription start site region 9299	42 bp downstream
Tssr9300	transcription start site region 9300	23 bp downstream
Tssr9301	transcription start site region 9301	102 bp upstream
Tssr9302	transcription start site region 9302	132 bp upstream
Tssr9303	transcription start site region 9303	194 bp upstream
Tssr9304	transcription start site region 9304	218 bp upstream
Tssr9305	transcription start site region 9305	236 bp upstream
Tssr9306	transcription start site region 9306	248 bp upstream
Tssr9307	transcription start site region 9307	252 bp upstream
Tssr9308	transcription start site region 9308	285 bp upstream
Tssr9309	transcription start site region 9309	299 bp upstream
Tssr9310	transcription start site region 9310	330 bp upstream
Tssr9311	transcription start site region 9311	342 bp upstream
Tssr9312	transcription start site region 9312	367 bp upstream
Tssr9313	transcription start site region 9313	387 bp upstream
Tssr9314	transcription start site region 9314	398 bp upstream
Tssr9315	transcription start site region 9315	492 bp upstream
Tssr9316	transcription start site region 9316	675 bp upstream
Tssr9317	transcription start site region 9317	952 bp upstream
Tssr9318	transcription start site region 9318	1681 bp upstream