rs8239052 SNP Detail

Summary

• ID
  rs8239052
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89256446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCACCC AATCAGGAAT
  GCCCTTTCTT AGGTCTAAGA GAAGTCTGTG GCCTAGTGCC CACTTGCCCT TCCTTTTCCC
  TCACAGTAGA GATGCCTGCC GGGAACACCC ATCTTTGGGT GAGCAGTGCA AACACTCTGA
  CCTCCCTAAA CAGCCTTGAT GCCCAGTCAG GCGCACCCGT TCCCAACAGC CTCCGCTTCC
  K
  CCGCCAGCAC CCCCCAACAA TGGCCCTCTC CTCTCCGGAC ACTCCACCCC CGCCTACCCT
  CTCGGCCCCC AGCCCAAGAC AGCAGCGGGA AGTGAAAGTT CCAAGGAGGA GTTGGTGTCC
  CAGTCTCTTT CCTGGCGAAA GCTCCCTCCC CTGGCTCCTC CGGGCCCCTC CCGCTCCGCC
  AGGCTTCTGG TGGCAACCGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ
ss12733513	AB022089_BS228_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ
rs8239052					SNP	T	T	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89256446 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4731419I09Rik	RIKEN cDNA 4731419I09 gene			1308 bp downstream
Adam15	ADAM metallopeptidase domain 15			Intron
				Noncoding-Transcript-Variant
Cpgi13424	CpG island 13424			within coordinates
Dcst1	DC-STAMP domain containing 1			1080 bp downstream
Gm66683	predicted gene, 66683			917 bp upstream
Rr397787	regulatory region 397787			803 bp upstream
Rr580053	regulatory region 580053			786 bp distal
Rr580054	regulatory region 580054			within coordinates
Rr580055	regulatory region 580055			810 bp proximal
Tssr34120	transcription start site region 34120			800 bp downstream
Tssr34121	transcription start site region 34121			829 bp downstream