rs8239053 SNP Detail

Summary

• ID
  rs8239053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89256110 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TATGG GTGAAATCCG TAAGTTGGGG
  R
  AAAAAAAACC CCTCCTTCCC ATATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac
ss12733514	AB022089_BS229_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac
rs8239053					SNP	A	A	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89256110 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4731419I09Rik	RIKEN cDNA 4731419I09 gene			972 bp downstream
Adam15	ADAM metallopeptidase domain 15			Intron
				Noncoding-Transcript-Variant
Cpgi13424	CpG island 13424			307 bp proximal
Dcst1	DC-STAMP domain containing 1			1416 bp downstream
Gm66683	predicted gene, 66683			1253 bp upstream
Rr397787	regulatory region 397787			1139 bp upstream
Rr580053	regulatory region 580053			450 bp distal
Rr580054	regulatory region 580054			within coordinates
Rr580055	regulatory region 580055			1146 bp proximal
Tssr34120	transcription start site region 34120			1136 bp downstream
Tssr34121	transcription start site region 34121			1165 bp downstream