rs8239054 SNP Detail

Summary

• ID
  rs8239054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89255849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGACAG ACAGGCTGAG
  GCCGAGGCAG ACACGTATGT GCAGAGGGGA TGGAGCTGAG TGTAGCCGGG GGCTTGAAGG
  AAAGGAGCAG GACCCGGATG GACCTGTTAC CCTCAAGATG ATTAATACTG TGGAGTGCGA
  GGAAAGAGAA AATCTTATTA GCAGGCTGTC CCTCACCTGA AGCACGTCTG CTAGGCTCAT
  Y
  GGGGGGCTGT CCTGAACAAC CCGGCTCTCC ATGGATCCAC TCAGCGTCCT CTCTGGGCTG
  GCTTGCTGCT CTTCCTCAGT GCCTCCTGCA GGGTCCCAGA ACATCCTAAG AGATTGCTGA
  GGAAATCCCT AGCAAGGCTG GAATCACTAG TGTCCTCAGA CCCACCGACC CTCAGCACAG
  AAGGCTATAT CAGTGACTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac
ss12733515	AB022089_BS230_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac
rs8239054					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89255849 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4731419I09Rik	RIKEN cDNA 4731419I09 gene			711 bp downstream
Adam15	ADAM metallopeptidase domain 15			Coding-Synonymous
				Noncoding-Transcript-Variant
Cpgi13424	CpG island 13424			568 bp proximal
Dcst1	DC-STAMP domain containing 1			1677 bp downstream
Gm66683	predicted gene, 66683			1514 bp upstream
Rr397787	regulatory region 397787			1400 bp upstream
Rr580053	regulatory region 580053			189 bp distal
Rr580054	regulatory region 580054			235 bp proximal
Rr580055	regulatory region 580055			1407 bp proximal
Tssr34120	transcription start site region 34120			1397 bp downstream
Tssr34121	transcription start site region 34121			1426 bp downstream