rs8239058 SNP Detail

Summary

• ID
  rs8239058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89250586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTCCCCC TTCATCTCTT
  CCACACCAGC TCACCCCATG GCCGTGGCAT TTTCTTCGAC ATTCCTGTGC TCCCAGGAGA
  TCCACGGGCT GGCATCGGTG GCCGATGCAC ACCTGCTCCG TAGAGAGAAG AGCAAAGATC
  ACATTCTCAA AGCCTTAGAG GGACTGGGGC CTGCAGGACT GTGAGGCTCC CCTTTACAGA
  Y
  GTGAAACCGA AGCTGGGTGG GGAAACAAGA CTGTTTGGCC TGAAGAATCT GGCTTGTTAT
  GGGTCAGAGG CTGCTTCCCA CCCATTCTCA ATCGCCCAGG CTACTCACCA GGCCAGGACC
  ACAGGCAGTG CCAGGCAGAG CCAGAAGAGG CTGGGCCACA TCATTGCCCA GGTCCAGGTC
  CACCCAGCTG CAGTTTAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ
ss12733519	AB022089_BS246_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ
rs8239058					SNP	C	C	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89250586 () rs orientation: forward

Symbol	Name	Function Class
4731419I09Rik	RIKEN cDNA 4731419I09 gene	within coordinates
Adam15	ADAM metallopeptidase domain 15	within coordinates
Tssr34119	transcription start site region 34119	914 bp upstream