rs8239064 SNP Detail

Summary

• ID
  rs8239064
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89247963 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTGGGCTGGG CCTTGCCCTG
  GCTCAGGACA GGTGGGAGGT GTGGTGCCCA ATCGCAGTTC TCATCCCTGC TTCCCCCCAG
  TGGTGTTCTT CATTAGGAGA CCAGGGTGCC CCCTCAGCCT TCAAAGTCCC AGATGCAGCA
  AAGGGTGAGC CTCCCGCCAT GGTCTCTACT ACCACCTGGT GGTCTATAGT AGGACTGCAG
  S
  CATCCAGGGA CTCCGTGATC GATCTGCACC TTCCTTCCCC GGGGCTCTGC GCATGCTCCC
  GTTTTCCTCT GGACACTCCC ACCCCCACCC TCGGCTGAGT TTGCATGTCG ACCCCTGGGT
  AGTGTCTGCA CGCTCACTAC CTTGGACCAT GCTTTCCAAG CCACTGCTCC TCTCTTTGTT
  CAGGCTGCGC TGGCTGACCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12733525	AB022089_BS254_1	ROCHEBIO	RPAMM	f	SNP	C		C	C		C		C	G					C	C
ss46749743	NES10735547	PERLEGEN	MM_PANEL2	r	SNP		G	G	G	G		G	G	C	G	G	G	G			G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8239064					SNP	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749743	NES10735547	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89247963 () rs orientation: reverse

Symbol	Name	Function Class
4731419I09Rik	RIKEN cDNA 4731419I09 gene	within coordinates
Adam15	ADAM metallopeptidase domain 15	within coordinates
Rr580051	regulatory region 580051	1056 bp distal
Rr580052	regulatory region 580052	15 bp proximal
Tssr30091	transcription start site region 30091	1007 bp downstream
Tssr34117	transcription start site region 34117	471 bp upstream
Tssr34118	transcription start site region 34118	179 bp upstream
Tssr34119	transcription start site region 34119	1659 bp downstream