rs8239068 SNP Detail

Summary

• ID
  rs8239068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89247094 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTCC AGCCCTAAAG AACCACCAGG
  Y
  GCTGTTAAGC AATACCTGGG GACGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZW/Lac
ss12733529	AB022089_BS256_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZW/Lac
rs8239068					SNP	C	C	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89247094 () rs orientation: reverse

Symbol	Name	Function Class
4731419I09Rik	RIKEN cDNA 4731419I09 gene	within coordinates
Adam15	ADAM metallopeptidase domain 15	within coordinates
Cpgi13423	CpG island 13423	1566 bp distal
Efna4	ephrin A4	1759 bp upstream
Rr580049	regulatory region 580049	1927 bp distal
Rr580050	regulatory region 580050	1269 bp distal
Rr580051	regulatory region 580051	187 bp distal
Rr580052	regulatory region 580052	884 bp proximal
Tssr30091	transcription start site region 30091	138 bp downstream
Tssr34115	transcription start site region 34115	1808 bp upstream
Tssr34116	transcription start site region 34116	1721 bp upstream
Tssr34117	transcription start site region 34117	353 bp downstream
Tssr34118	transcription start site region 34118	648 bp downstream