rs8239132 SNP Detail

Summary

• ID
  rs8239132
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93004870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATGCTCA TTTTAGGTCA
  GAAAAGCAAT GCCAACCACA CTTCGAACTC CCATGATCTA CACTCAGAGT CAGATGGCAG
  GTAGGGCGTC ATACCTCCAC AGAGTAGGAC ATGTTGTCGT TGGTGGTGTC GTTGATTCGA
  GAGAAGAGGT CTTCGCAGAG CTTCAGAGAT GGAGGAAAAC ACATTAGCTG ATGAGGGCTG
  S
  TGACCTTGTA CCCAGGCAGG GTGCTGTTTT ACCAGACCCC CGTGGTCCCT CCAAAATGCA
  CATTCTAATG TAAAGGCCTG AACCAAGCAA GCATCCAGTC TTCTTACTCT AGTGCCCTGG
  TTAGTATCTA CCCTTCCTTA GATTATCTGT TTGCCTGTCC TCATCTGCAT AGAGGGTGGG
  GCCACCGCTC CTCTGAGCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12733602	D29951_BS414_1	ROCHEBIO	RPAMM	f	SNP	C		C	C		C		C	C	G	C				C
ss49628974	NES12929929	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C		C	C		G	C	C	C	G		C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8239132					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49628974	NES12929929	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93004870 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Rr35385	regulatory region 35385	1532 bp proximal
Rr371712	regulatory region 371712	1721 bp upstream
Tssr13001	transcription start site region 13001	940 bp upstream
Tssr13002	transcription start site region 13002	910 bp upstream
Tssr13003	transcription start site region 13003	893 bp upstream