rs8239133 SNP Detail

Summary

• ID
  rs8239133
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93004883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGAGTCAG ATGGCAGGTA GGGCGTCATA
  CCTCCACAGA GTAGGACATG TTGTCGTTGG TGGTGTCGTT GATTCGAGAG AAGAGGTCTT
  CGCAGAGCTT CAGAGATGGA GGAAAACACA TTAGCTGATG AGGGCTGCTG ACCTTGTACC
  Y
  AGGCAGGGTG CTGTTTTACC AGACCCCCGT GGTCCCTCCA AAATGCACAT TCTAATGTAA
  AGGCCTGAAC CAAGCAAGCA TCCAGTCTTC TTACTCTAGT GCCCTGGTTA GTATCTACCC
  TTCCTTAGAT TATCTGTTTG CCTGTCCTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
ss12733603	D29951_BS414_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C		T
ss319843216	CHEV_1_94973738	CHEVERUD	SCREENING_POP	f	SNP									T		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
rs8239133					SNP	C	C	C	C	C	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93004883 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Rr35385	regulatory region 35385	1519 bp proximal
Rr371712	regulatory region 371712	1708 bp upstream
Tssr13001	transcription start site region 13001	953 bp upstream
Tssr13002	transcription start site region 13002	923 bp upstream
Tssr13003	transcription start site region 13003	906 bp upstream