rs8239134 SNP Detail

Summary

• ID
  rs8239134
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93004894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAATGCCA ACCACACTTC
  GAACTCCCAT GATCTACACT CAGAGTCAGA TGGCAGGTAG GGCGTCATAC CTCCACAGAG
  TAGGACATGT TGTCGTTGGT GGTGTCGTTG ATTCGAGAGA AGAGGTCTTC GCAGAGCTTC
  AGAGATGGAG GAAAACACAT TAGCTGATGA GGGCTGCTGA CCTTGTACCC AGGCAGGGTG
  Y
  TGTTTTACCA GACCCCCGTG GTCCCTCCAA AATGCACATT CTAATGTAAA GGCCTGAACC
  AAGCAAGCAT CCAGTCTTCT TACTCTAGTG CCCTGGTTAG TATCTACCCT TCCTTAGATT
  ATCTGTTTGC CTGTCCTCAT CTGCATAGAG GGTGGGGCCA CCGCTCCTCT GAGCATTCCT
  CCTTCTCTGA CTAGGACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12733604	D29951_BS414_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8239134					SNP	C	C	C	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93004894 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Rr35385	regulatory region 35385	1508 bp proximal
Rr371712	regulatory region 371712	1697 bp upstream
Tssr13001	transcription start site region 13001	964 bp upstream
Tssr13002	transcription start site region 13002	934 bp upstream
Tssr13003	transcription start site region 13003	917 bp upstream