rs8239139 SNP Detail

Summary

• ID
  rs8239139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93004998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

    TCGCAGAG CTTCAGAGAT GGAGGAAAAC ACATTAGCTG ATGAGGGCTG NTGACCTTGT
  ACCNAGGCAG GGTGNTGTTT TACCAGACCC CCGTGGTCCC TCCAAAATGC ACATTCTAAT
  GTAAAGGCCT GAACCAAGCA AGCATCCAGT CTTCTTACTC TAGTNNNCCN TGGTTAGTAT
  Y
  TACCCTTCCT TAGATTATCT GTTTGCCTGT CCTCATCTGC ATAGAGGGTG GGGCCACCGC
  TCCTCTGAGC ATTCCTCCTT CTCTGACTAG GACAAGTGCT NGCCCAGACC CTGAGATCTC
  CTACCAGGAG GAGAAAAGGG CTGGGAACGG TCAAACTTTG AGTGGCTTCT GAGGAGCCAT
  CTGTATCCTA AGAATGTGGT CACACCTTAG GCCACCAGTC ACCTGACNCC AGTCATCACA
  GCTCCCACAG AGANCATCTA TCCTGCCAGT GCCTTATGTT GTGTATATGN CNCCACTGAG
  TACCTTCAAA GACTGGCCTC CTGCAACCCA TCCCANGCCA TTTTCCCTCC CTCCTATCCT
  ACCCTTCCTC CTCTCAGGCC ACCTCCCACT CCTTTCCAGG CCCCAGCCAT GCCTGTGGNA
  TGATGCCTTG CTGGTCCTTC TCCTGTTTCC CCATCATGGT NTAGGACTTG CCGGCCCCCG
  TCTGCCCATA GGCAAAGATG CA                                         
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12733609	D29951_BS414_8	ROCHEBIO	RPAMM	f	SNP	C		C	C		C		C	C	T	C				C
ss49628973	NES12929931	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C		C	C		T	C	C	C	T		C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8239139					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49628973	NES12929931	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93004998 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Rr35385	regulatory region 35385	1404 bp proximal
Rr371712	regulatory region 371712	1593 bp upstream
Tssr13001	transcription start site region 13001	1068 bp upstream
Tssr13002	transcription start site region 13002	1038 bp upstream
Tssr13003	transcription start site region 13003	1021 bp upstream