rs8239141 SNP Detail

Summary

• ID
  rs8239141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93005225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT TAGGCCACCA GTCACCTGAC
  Y
  CCAGTCATCA CAGCTCCCAC AGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss12733611	D29951_BS414_10	ROCHEBIO	RPAMM	f	SNP	C		C	T			C	T	C	C					C
ss45112849	mCV24966419	ABI	CRAMUS_MOUSE	f	SNP			C					T		C
ss49628972	NES12929934	PERLEGEN	MM_PANEL2	f	SNP		C	C	T	T	T	C		C	C	T	T		C		T	T	C
ss144956791	ENSMUSSNP5691796	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							C
ss319843217	CHEV_1_94974080	CHEVERUD	SCREENING_POP	f	SNP													T						C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs8239141					SNP	C	C	C	T	T	T	C	T	C	C	T	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49628972	NES12929934	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93005225 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Rr35385	regulatory region 35385	1177 bp proximal
Rr371712	regulatory region 371712	1366 bp upstream
Tssr13001	transcription start site region 13001	1295 bp upstream
Tssr13002	transcription start site region 13002	1265 bp upstream
Tssr13003	transcription start site region 13003	1248 bp upstream