rs8239142 SNP Detail

Summary

• ID
  rs8239142
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93005251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCGCTC CTCTGAGCAT
  TCCTCCTTCT CTGACTAGGA CAAGTGCTGC CCAGACCCTG AGATCTCCTA CCAGGAGGAG
  AAAAGGGCTG GGAACGGTCA AACTTTGAGT GGCTTCTGAG GAGCCATCTG TATCCTAAGA
  ATGTGGTCAC ACCTTAGGCC ACCAGTCACC TGACTCCAGT CATCACAGCT CCCACAGAGA
  M
  CATCTATCCT GCCAGTGCCT TATGTTGTGT ATATGCCACC ACTGAGTACC TTCAAAGACT
  GGCCTCCTGC AACCCATCCC AAGCCATTTT CCCTCCCTCC TATCCTACCC TTCCTCCTCT
  CAGGCCACCT CCCACTCCTT TCCAGGCCCC AGCCATGCCT GTGGAATGAT GCCTTGCTGG
  TCCTTCTCCT GTTTCCCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12733612	D29951_BS414_11	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8239142					SNP	C	C	C	C	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93005251 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Rr371712	regulatory region 371712	1340 bp upstream
Tssr13001	transcription start site region 13001	1321 bp upstream
Tssr13002	transcription start site region 13002	1291 bp upstream
Tssr13003	transcription start site region 13003	1274 bp upstream