rs8239143 SNP Detail

Summary

• ID
  rs8239143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:93005287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACAAGTG CTGCCCAGAC
  CCTGAGATCT CCTACCAGGA GGAGAAAAGG GCTGGGAACG GTCAAACTTT GAGTGGCTTC
  TGAGGAGCCA TCTGTATCCT AAGAATGTGG TCACACCTTA GGCCACCAGT CACCTGACTC
  CAGTCATCAC AGCTCCCACA GAGACCATCT ATCCTGCCAG TGCCTTATGT TGTGTATATG
  Y
  CACCACTGAG TACCTTCAAA GACTGGCCTC CTGCAACCCA TCCCAAGCCA TTTTCCCTCC
  CTCCTATCCT ACCCTTCCTC CTCTCAGGCC ACCTCCCACT CCTTTCCAGG CCCCAGCCAT
  GCCTGTGGAA TGATGCCTTG CTGGTCCTTC TCCTGTTTCC CCATCATGGT GTAGGACTTG
  CCGGCCCCCG TCTGCCCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12733613	D29951_BS414_12	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8239143					SNP	C	C	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93005287 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kif1a	kinesin family member 1A			Intron
				Noncoding-Transcript-Variant
Rr371712	regulatory region 371712			1304 bp upstream
Rr415931	regulatory region 415931			1767 bp proximal
Tssr13001	transcription start site region 13001			1357 bp upstream
Tssr13002	transcription start site region 13002			1327 bp upstream
Tssr13003	transcription start site region 13003			1310 bp upstream