rs8239143 SNP Detail

Summary

• ID
  rs8239143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93005287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACAAGTG CTGCCCAGAC
  CCTGAGATCT CCTACCAGGA GGAGAAAAGG GCTGGGAACG GTCAAACTTT GAGTGGCTTC
  TGAGGAGCCA TCTGTATCCT AAGAATGTGG TCACACCTTA GGCCACCAGT CACCTGACTC
  CAGTCATCAC AGCTCCCACA GAGACCATCT ATCCTGCCAG TGCCTTATGT TGTGTATATG
  Y
  CACCACTGAG TACCTTCAAA GACTGGCCTC CTGCAACCCA TCCCAAGCCA TTTTCCCTCC
  CTCCTATCCT ACCCTTCCTC CTCTCAGGCC ACCTCCCACT CCTTTCCAGG CCCCAGCCAT
  GCCTGTGGAA TGATGCCTTG CTGGTCCTTC TCCTGTTTCC CCATCATGGT GTAGGACTTG
  CCGGCCCCCG TCTGCCCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12733613	D29951_BS414_12	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8239143					SNP	C	C	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93005287 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Rr35385	regulatory region 35385	1115 bp proximal
Rr371712	regulatory region 371712	1304 bp upstream
Tssr13001	transcription start site region 13001	1357 bp upstream
Tssr13002	transcription start site region 13002	1327 bp upstream
Tssr13003	transcription start site region 13003	1310 bp upstream