rs8239144 SNP Detail

Summary

• ID
  rs8239144
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:93005289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGTGCT GCCCAGACCC
  TGAGATCTCC TACCAGGAGG AGAAAAGGGC TGGGAACGGT CAAACTTTGA GTGGCTTCTG
  AGGAGCCATC TGTATCCTAA GAATGTGGTC ACACCTTAGG CCACCAGTCA CCTGACTCCA
  GTCATCACAG CTCCCACAGA GACCATCTAT CCTGCCAGTG CCTTATGTTG TGTATATGCC
  M
  CCACTGAGTA CCTTCAAAGA CTGGCCTCCT GCAACCCATC CCAAGCCATT TTCCCTCCCT
  CCTATCCTAC CCTTCCTCCT CTCAGGCCAC CTCCCACTCC TTTCCAGGCC CCAGCCATGC
  CTGTGGAATG ATGCCTTGCT GGTCCTTCTC CTGTTTCCCC ATCATGGTGT AGGACTTGCC
  GGCCCCCGTC TGCCCATAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ
ss12733614	D29951_BS414_13	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ
rs8239144					SNP	A	A	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93005289 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kif1a	kinesin family member 1A			Intron
				Noncoding-Transcript-Variant
Rr371712	regulatory region 371712			1302 bp upstream
Rr415931	regulatory region 415931			1765 bp proximal
Tssr13001	transcription start site region 13001			1359 bp upstream
Tssr13002	transcription start site region 13002			1329 bp upstream
Tssr13003	transcription start site region 13003			1312 bp upstream