rs8239145 SNP Detail

Summary

• ID
  rs8239145
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93005333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGCTGGG AACGGTCAAA
  CTTTGAGTGG CTTCTGAGGA GCCATCTGTA TCCTAAGAAT GTGGTCACAC CTTAGGCCAC
  CAGTCACCTG ACTCCAGTCA TCACAGCTCC CACAGAGACC ATCTATCCTG CCAGTGCCTT
  ATGTTGTGTA TATGCCACCA CTGAGTACCT TCAAAGACTG GCCTCCTGCA ACCCATCCCA
  R
  GCCATTTTCC CTCCCTCCTA TCCTACCCTT CCTCCTCTCA GGCCACCTCC CACTCCTTTC
  CAGGCCCCAG CCATGCCTGT GGAATGATGC CTTGCTGGTC CTTCTCCTGT TTCCCCATCA
  TGGTGTAGGA CTTGCCGGCC CCCGTCTGCC CATAGGCAAA GATGCACACA TTGTAGCCCT
  CAAAGGCATG CTGTAGCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12733615	D29951_BS414_14	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8239145					SNP	A	A	A	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93005333 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Rr35385	regulatory region 35385	1069 bp proximal
Rr371712	regulatory region 371712	1258 bp upstream
Tssr13001	transcription start site region 13001	1403 bp upstream
Tssr13002	transcription start site region 13002	1373 bp upstream
Tssr13003	transcription start site region 13003	1356 bp upstream