rs8239147 SNP Detail

Summary

• ID
  rs8239147
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93005458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGCCAGT GCCTTATGTT
  GTGTATATGC CACCACTGAG TACCTTCAAA GACTGGCCTC CTGCAACCCA TCCCAAGCCA
  TTTTCCCTCC CTCCTATCCT ACCCTTCCTC CTCTCAGGCC ACCTCCCACT CCTTTCCAGG
  CCCCAGCCAT GCCTGTGGAA TGATGCCTTG CTGGTCCTTC TCCTGTTTCC CCATCATGGT
  R
  TAGGACTTGC CGGCCCCCGT CTGCCCATAG GCAAAGATGC ACACATTGTA GCCCTCAAAG
  GCATGCTGTA GCATCTCTTC CCCAATGTCC CTGTAGACCT GCTTCTGAGA GGCATAGTTG
  ATGTCCTCCG GCTGCAGAGA GAAGAGATGT AGCTTAGGAG GGTATGGGCT CTGAAACTGC
  ACCTGAGTCC TCAGAGCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J
ss12733617	D29951_BS414_16	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J
rs8239147					SNP	G	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93005458 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Rr35385	regulatory region 35385	944 bp proximal
Rr371712	regulatory region 371712	1133 bp upstream
Tssr13001	transcription start site region 13001	1528 bp upstream
Tssr13002	transcription start site region 13002	1498 bp upstream
Tssr13003	transcription start site region 13003	1481 bp upstream