rs8239527 SNP Detail

Summary

• ID
  rs8239527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93004139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG CTGAGATGTA CCATCAGGAC
  Y
  CCCAAAGTGA GGCTAGGCTG CACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
ss12734033	D29951_BS415_1	ROCHEBIO	RPAMM	f	SNP		C	C	T	T	C	T	C	C		C
ss44980703	mCV24966614	ABI	CRAMUS_MOUSE	f	SNP	C		C				T		C
ss144956771	ENSMUSSNP375998	ENSEMBL	ENSEMBL_Sanger	f	SNP	C								C
ss319843213	CHEV_1_94972994	CHEVERUD	SCREENING_POP	f	SNP										C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
rs8239527					SNP	C	C	C	T	T	C	T	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93004139 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Tssr13001	transcription start site region 13001	209 bp upstream
Tssr13002	transcription start site region 13002	179 bp upstream
Tssr13003	transcription start site region 13003	162 bp upstream