rs8239528 SNP Detail

Summary

• ID
  rs8239528
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93004197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGGGTT CAGGAGGTCA
  CGGACTCGCT CACAGTAAAT CTCCATGTAG CTGACCTGCA GAGCAACATC ATCAGAACCC
  CAAGTGAGGC TGGGCTGTAC CATCAGGACC CCCAAAGTGA GGCTGAGATG TACCATCAGG
  ACTCCCAAAG TGAGGCTAGG CTGCACCATC AGAGCTCTGT GGCAGGGTTC TATGGCAGAA
  Y
  AGAGGATTGA TTTCTGGGTA GGACATACAG GAAATCCAGA CTGTGGGCTC TGTATGAGTG
  TGAGTGTCAG CCTTCTCCAG ATGTCCAGTT CTCTCTCCAT GTAACTGACC TACAGGACCA
  AGCTACACCC TCAGGGACTC CAAGGTAGGA CAGTGGTTCC CAGAGGGGTA GTGTACACAA
  AGGACACTCA GCCAGGGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12734034	D29951_BS415_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8239528					SNP	T	T	T	T	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93004197 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Tssr13001	transcription start site region 13001	267 bp upstream
Tssr13002	transcription start site region 13002	237 bp upstream
Tssr13003	transcription start site region 13003	220 bp upstream