rs8239529 SNP Detail

Summary

• ID
  rs8239529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93004203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAGAGCAA CATCATCAGA ACCCCAAGTG
  AGGCTGGGCT GTACCATCAG GACCCCCAAA GTGAGGCTGA GATGTACCAT CAGGACTCCC
  AAAGTGAGGC TAGGCTGCAC CATCAGAGCT CTGTGGCAGG GTTCTATGGC AGAATAGAGG
  R
  TTGATTTCTG GGTAGGACAT ACAGGAAATC CAGACTGTGG GCTCTGTATG AGTGTGAGTG
  TCAGCCTTCT CCAGATGTCC AGTTCTCTCT CCATGTAACT GACCTACAGG ACCAAGCTAC
  ACCCTCAGGG ACTCCAAGGT AGGACAGTGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss12734035	D29951_BS415_3	ROCHEBIO	RPAMM	f	SNP			G	A		A		G	A	G	G					G
ss45055192	mCV24966604	ABI	CRAMUS_MOUSE	f	SNP		G	G						A		G
ss49628982	NES12929914	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A		A	G		G	G	A	A		G		A	A	G		G
ss144956775	ENSMUSSNP1850231	ENSEMBL	ENSEMBL_Sanger	f	SNP			G								G
ss319843214	CHEV_1_94973058	CHEVERUD	SCREENING_POP	f	SNP														G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs8239529					SNP	G	G	G	A	A	A	A	G	A	G	G	A	A	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49628982	NES12929914	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93004203 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Tssr13001	transcription start site region 13001	273 bp upstream
Tssr13002	transcription start site region 13002	243 bp upstream
Tssr13003	transcription start site region 13003	226 bp upstream