rs8239686 SNP Detail

Summary

• ID
  rs8239686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40715377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCAAGCA GACACAGACT
  TTCACCACCT ACTCTGACAA CCAGCCTGGT GTACTCATTC AGGTATGTTG TCCCTAGAAT
  TTTGTAGCTT GTATAGAAAG CCCAGGGAAG TTCCTCGCTG TGATGATGGA TTCCAAAACC
  ATTCGTAGTT TCCACCAGAA ATGCTGTGTT GGCTAGTTCC TTCCTTGGAT GTCTGAGCGA
  R
  CTTATCTTCC CCAAATTTGA GCTTAAGCCA CACGAGCAGT AGTTTCTAAA ATTGGATGTC
  TTAATTTTTA TTGTCTCTTC TAGGTGTATG AAGGTGAAAG GGCCATGACC AAGGACAACA
  ACCTGCTTGG AAAGTTCGAG CTCACAGGCA TCCCTCCAGC ACCCCGTGGG GTCCCTCAGA
  TTGAGGTTAC TTTTGACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12734228	X54402_DA204_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8239686					SNP	A	A	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40715377 () rs orientation: forward

Symbol	Name	Function Class
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr206241	regulatory region 206241	1023 bp proximal
Snord14c	small nucleolar RNA, C/D box 14C	413 bp downstream
Snord14d	small nucleolar RNA, C/D box 14D	1 bp downstream
Snord14e	small nucleolar RNA, C/D box 14E	667 bp upstream
Tssr84483	transcription start site region 84483	1712 bp downstream
Tssr84484	transcription start site region 84484	1425 bp downstream
Tssr84485	transcription start site region 84485	143 bp upstream
Tssr84486	transcription start site region 84486	658 bp upstream