rs8239687 SNP Detail

Summary

• ID
  rs8239687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40715411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAACCAG CCTGGTGTAC
  TCATTCAGGT ATGTTGTCCC TAGAATTTTG TAGCTTGTAT AGAAAGCCCA GGGAAGTTCC
  TCGCTGTGAT GATGGATTCC AAAACCATTC GTAGTTTCCA CCAGAAATGC TGTGTTGGCT
  AGTTCCTTCC TTGGATGTCT GAGCGAACTT ATCTTCCCCA AATTTGAGCT TAAGCCACAC
  R
  AGCAGTAGTT TCTAAAATTG GATGTCTTAA TTTTTATTGT CTCTTCTAGG TGTATGAAGG
  TGAAAGGGCC ATGACCAAGG ACAACAACCT GCTTGGAAAG TTCGAGCTCA CAGGCATCCC
  TCCAGCACCC CGTGGGGTCC CTCAGATTGA GGTTACTTTT GACATCGATG CCAATGGCAT
  CCTCAATGTT TCTGCTGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ
ss12734229	X54402_DA204_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ
rs8239687					SNP	G	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40715411 () rs orientation: forward

Symbol	Name	Function Class
Hspa8	heat shock protein 8	within coordinates
Rr194757	regulatory region 194757	1990 bp proximal
Rr206240	regulatory region 206240	within coordinates
Rr206241	regulatory region 206241	989 bp proximal
Snord14c	small nucleolar RNA, C/D box 14C	447 bp downstream
Snord14d	small nucleolar RNA, C/D box 14D	35 bp downstream
Snord14e	small nucleolar RNA, C/D box 14E	633 bp upstream
Tssr84483	transcription start site region 84483	1746 bp downstream
Tssr84484	transcription start site region 84484	1459 bp downstream
Tssr84485	transcription start site region 84485	109 bp upstream
Tssr84486	transcription start site region 84486	624 bp upstream