rs8239688 SNP Detail

Summary

• ID
  rs8239688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40715412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAACCAGC CTGGTGTACT
  CATTCAGGTA TGTTGTCCCT AGAATTTTGT AGCTTGTATA GAAAGCCCAG GGAAGTTCCT
  CGCTGTGATG ATGGATTCCA AAACCATTCG TAGTTTCCAC CAGAAATGCT GTGTTGGCTA
  GTTCCTTCCT TGGATGTCTG AGCGAACTTA TCTTCCCCAA ATTTGAGCTT AAGCCACACG
  R
  GCAGTAGTTT CTAAAATTGG ATGTCTTAAT TTTTATTGTC TCTTCTAGGT GTATGAAGGT
  GAAAGGGCCA TGACCAAGGA CAACAACCTG CTTGGAAAGT TCGAGCTCAC AGGCATCCCT
  CCAGCACCCC GTGGGGTCCC TCAGATTGAG GTTACTTTTG ACATCGATGC CAATGGCATC
  CTCAATGTTT CTGCTGTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ
ss12734230	X54402_DA204_3	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ
rs8239688					SNP	A	A	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40715412 () rs orientation: forward

Symbol	Name	Function Class
Hspa8	heat shock protein 8	within coordinates
Rr194757	regulatory region 194757	1989 bp proximal
Rr206240	regulatory region 206240	within coordinates
Rr206241	regulatory region 206241	988 bp proximal
Snord14c	small nucleolar RNA, C/D box 14C	448 bp downstream
Snord14d	small nucleolar RNA, C/D box 14D	36 bp downstream
Snord14e	small nucleolar RNA, C/D box 14E	632 bp upstream
Tssr84483	transcription start site region 84483	1747 bp downstream
Tssr84484	transcription start site region 84484	1460 bp downstream
Tssr84485	transcription start site region 84485	108 bp upstream
Tssr84486	transcription start site region 84486	623 bp upstream