rs8239736 SNP Detail

Summary

• ID
  rs8239736
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40713363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

      CCAATG ACCAGGGTAA CCGCACCACA CCAAGCTATG TTGCTTTCAC GGACACAGAG
  M
  GATTAATTGG GGATGCGGCC AAGAATCAGG TTGCAATGAA CCCCACCAAC ACAGTTTTTG
  GTAAGTCGCC AGCATCTTTG TGCCACTAGC ATGAGNNTAA AAGGGCTGGG GGGCAGGGCA
  TTTGGAATGT AGAAACAGAT CTGCCTTAAT AACTGCAGCC TGAGATTGCA ACTGTTTAAA
  TATGACAATA TAAGGCCACA AGATTTTAAA TATGGGCCTT GGCTTCCTGC ACTAGAGAT 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ
ss12734303	U73744_DA269_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ
rs8239736					SNP	A	A	A	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40713363 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	1911 bp distal
Cpgi21603	CpG island 21603	176 bp distal
Gm57042	predicted gene, 57042	1022 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	518 bp downstream
Snord14c	small nucleolar RNA, C/D box 14C	1516 bp upstream
Snord14d	small nucleolar RNA, C/D box 14D	1928 bp upstream
Tssr84480	transcription start site region 84480	1961 bp downstream
Tssr84481	transcription start site region 84481	783 bp downstream
Tssr84482	transcription start site region 84482	154 bp downstream
Tssr84483	transcription start site region 84483	299 bp upstream
Tssr84484	transcription start site region 84484	558 bp upstream
Tssr88972	transcription start site region 88972	1281 bp upstream