rs8239740 SNP Detail

Summary

• ID
  rs8239740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40715264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTCTGAG AACGTTCAGG
  ATTTGCTGCT CTTGGATGTC ACTCCTCTTT CCCTTGGTAT TGAAACTGCT GGCGGAGTCA
  TGACTGTCCT CATCAAGCGC AATACCACCA TCCCCACCAA GCAGACACAG ACTTTCACCA
  CCTACTCTGA CAACCAGCCT GGTGTACTCA TTCAGGTATG TTGTCCCTAG AATTTTGTAG
  Y
  TTGTATAGAA AGCCCAGGGA AGTTCCTCGC TGTGATGATG GATTCCAAAA CCATTCGTAG
  TTTCCACCAG AAATGCTGTG TTGGCTAGTT CCTTCCTTGG ATGTCTGAGC GAACTTATCT
  TCCCCAAATT TGAGCTTAAG CCACACGAGC AGTAGTTTCT AAAATTGGAT GTCTTAATTT
  TTATTGTCTC TTCTAGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12734307	U73744_DA271_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8239740					SNP	C	C	C	C	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40715264 () rs orientation: forward

Symbol	Name	Function Class
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr206241	regulatory region 206241	1136 bp proximal
Snord14c	small nucleolar RNA, C/D box 14C	300 bp downstream
Snord14d	small nucleolar RNA, C/D box 14D	27 bp upstream
Snord14e	small nucleolar RNA, C/D box 14E	780 bp upstream
Tssr84483	transcription start site region 84483	1599 bp downstream
Tssr84484	transcription start site region 84484	1312 bp downstream
Tssr84485	transcription start site region 84485	256 bp upstream
Tssr84486	transcription start site region 84486	771 bp upstream